Substrate Detection

Substrate detection is the identification and localization of the molecular, cellular, or circuit-level substrates that support neural activity and behavior. In neuroscience, this process typically combines selective probes, biochemical or imaging signals, and spatial analysis to distinguish a target substrate from surrounding tissue and relate its distribution to neuronal function. Researchers use substrate detection to map neurotransmitter systems, characterize receptor or enzyme activity, and identify the neural structures involved in sensory processing, learning, disease, or drug responses. Reliable detection connects measurable molecular signals with neural mechanisms, supporting circuit analysis and the development of more precise experimental and therapeutic strategies.

Substrate Detection - Related Videos

Research

JoVE Journal - Engineering
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Surface Enhanced Raman Spectroscopy Detection of Biomolecules Using EBL Fabricated Nanostructured Substrates

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Cited by 26 •

2015

We describe the fabrication and characterization of nano-biological systems interfacing nanostructured substrates with immobilized proteins and aptamers. The relevant experimental steps involving lithographic fabrication of nanostructured substrates, bio-functionalization, and surface-enhanced Raman spectroscopy (SERS) characterization, are reported. SERS detection of surface-immobilized proteins, and probing of protein-ligand and aptamer-ligand binding is demonstrated.

Research

JoVE EoE - Cancers of the Nervous System

Fluorescent Peptide Zymography: A Modified Technique to Detect Protease Activity Using Fluorogenic Substrates in Zymogram Gels

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2025

In this video, we perform zymography, an electrophoretic technique, to analyze the proteolytic activity within biological samples.

SUMOylation Assay: An In Vitro Technique to Detect the SUMOylation Status of Substrate Proteins by Immunoblotting

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2025

This video demonstrates the in vitro method for SUMOylation of substrate proteins using a sequential enzyme cascade. Further, the SUMOylated status of the protein is identified using the electrophoresis and immunoblotting technique.

Identification of Kinase-substrate Pairs Using High Throughput Screening

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Cited by 1 •

2015

Protein phosphorylation is a central feature of how cells interpret and respond to information in their extracellular milieu. Here, we present a high throughput screening protocol using kinases purified from mammalian cells to rapidly identify kinases that phosphorylate a substrate(s) of interest.

Substrate Oxidation Assay in Cultured Cells: An In Vitro Assay to Quantify Substrate Oxidation in Cells by Measuring Radioactive Signals from Trapped CO2

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2025

This video demonstrates a quantification technique for CO2 released during substrate oxidation using 14C-radiolabeled substrates. The released 14CO2 is trapped in an alkaline solution and quantified by a scintillation counter. The oxidation of different substrates varies between tissues and reflects the pathophysiological condition of the tissue.

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