Daniel F. Voytas

Department of Genetics, University of Minnesota

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 14	2014

Other Publications

Article	Year
Translational recoding signals between gag and pol in diverse LTR retrotransposons. RNA (New York, N.Y.)\| PubMed ID: 14623998	2003
Athila4 of Arabidopsis and Calypso of soybean define a lineage of endogenous plant retroviruses. Genome research\| PubMed ID: 11779837	2002
Ty5 gag mutations increase retrotransposition and suggest a role for hydrogen bonding in the function of the nucleocapsid zinc finger. Journal of virology\| PubMed ID: 11884548	2002
Common physical properties of DNA affecting target site selection of sleeping beauty and other Tc1/mariner transposable elements. Journal of molecular biology\| PubMed ID: 12381300	2002
Genes of the Pseudoviridae (Ty1/copia retrotransposons). Molecular biology and evolution\| PubMed ID: 12411593	2002
The soybean retroelement SIRE1 uses stop codon suppression to express its envelope-like protein. EMBO reports\| PubMed ID: 12634845	2003
Controlling integration specificity of a yeast retrotransposon. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 12730380	2003
SIRE1, an endogenous retrovirus family from Glycine max, is highly homogeneous and evolutionarily young. Molecular biology and evolution\| PubMed ID: 12777503	2003
CEN plasmid segregation is destabilized by tethered determinants of Ty 5 integration specificity: a role for double-strand breaks in CEN antagonism. Chromosoma\| PubMed ID: 12883945	2003
The diversity of LTR retrotransposons. Genome biology\| PubMed ID: 15186483	2004
Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae. Genome biology\| PubMed ID: 15461796	2004
A eukaryotic gene family related to retroelement integrases. Trends in genetics : TIG\| PubMed ID: 15734571	2005
SplitTester: software to identify domains responsible for functional divergence in protein family. BMC bioinformatics\| PubMed ID: 15929795	2005
The Sireviruses, a plant-specific lineage of the Ty1/copia retrotransposons, interact with a family of proteins related to dynein light chain 8. Plant physiology\| PubMed ID: 16183843	2005
High-frequency homologous recombination in plants mediated by zinc-finger nucleases. The Plant journal : for cell and molecular biology\| PubMed ID: 16262717	2005
Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly. Nature protocols\| PubMed ID: 17406455	2006
Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool. Nucleic acids research\| PubMed ID: 17526515	2007
Phosphorylation regulates integration of the yeast Ty5 retrotransposon into heterochromatin. Molecular cell\| PubMed ID: 17643377	2007
Retrotransposon target site selection by imitation of a cellular protein. Molecular and cellular biology\| PubMed ID: 18086891	2008
Genomics: fighting fire with fire. Nature\| PubMed ID: 18216844	2008
Chromodomains direct integration of retrotransposons to heterochromatin. Genome research\| PubMed ID: 18256242	2008
Targeting integration of the Saccharomyces Ty5 retrotransposon. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 18370074	2008
Unexpected failure rates for modular assembly of engineered zinc fingers. Nature methods\| PubMed ID: 18446154	2008
Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification. Molecular cell\| PubMed ID: 18657511	2008
Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arrays. Nucleic acids research\| PubMed ID: 18812396	2009
An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins. Nucleic acids research\| PubMed ID: 19056825	2009
High-frequency modification of plant genes using engineered zinc-finger nucleases. Nature\| PubMed ID: 19404258	2009
Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays. Nature protocols\| PubMed ID: 19798082	2009
Plant science. DNA binding made easy. Science (New York, N.Y.)\| PubMed ID: 20007890	2009
Welcome to mobile DNA. Mobile DNA\| PubMed ID: 20226071	2010
ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool. Nucleic acids research\| PubMed ID: 20435679	2010
High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 20508152	2010
Targeting DNA double-strand breaks with TAL effector nucleases. Genetics\| PubMed ID: 20660643	2010
Retrotransposon vectors for gene delivery in plants. Mobile DNA\| PubMed ID: 20678194	2010
A transient assay for monitoring zinc finger nuclease activity at endogenous plant gene targets. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 20680843	2010
Meeting report for mobile DNA 2010. Mobile DNA\| PubMed ID: 20735816	2010
Predicting success of oligomerized pool engineering (OPEN) for zinc finger target site sequences. BMC bioinformatics\| PubMed ID: 21044337	2010
Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA). Nature methods\| PubMed ID: 21151135	2011
Targeted mutagenesis in Arabidopsis using zinc-finger nucleases. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 21181530	2011
ZFNGenome: a comprehensive resource for locating zinc finger nuclease target sites in model organisms. BMC genomics\| PubMed ID: 21276248	2011
Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases. Plant physiology\| PubMed ID: 21464476	2011
Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic acids research\| PubMed ID: 21493687	2011
Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 21788500	2011
A TALE of two nucleases: gene targeting for the masses? Zebrafish\| PubMed ID: 21929364	2011
TAL effectors: customizable proteins for DNA targeting. Science (New York, N.Y.)\| PubMed ID: 21960622	2011
A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon. Genome research\| PubMed ID: 22219511	2012
TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction. Nucleic acids research\| PubMed ID: 22693217	2012
Simple methods for generating and detecting locus-specific mutations induced with TALENs in the zebrafish genome. PLoS genetics\| PubMed ID: 22916025	2012
In vivo genome editing using a high-efficiency TALEN system. Nature\| PubMed ID: 23000899	2012
Efficient TALEN-mediated gene knockout in livestock. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23027955	2012
Targeting G with TAL effectors: a comparison of activities of TALENs constructed with NN and NK repeat variable di-residues. PloS one\| PubMed ID: 23028976	2012
Transcription activator-like effector nucleases enable efficient plant genome engineering. Plant physiology\| PubMed ID: 23124327	2013
Zinc Finger Database (ZiFDB) v2.0: a comprehensive database of C₂H₂ zinc fingers and engineered zinc finger arrays. Nucleic acids research\| PubMed ID: 23203887	2013
Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways. Genome research\| PubMed ID: 23282329	2013
Rapid and efficient gene modification in rice and Brachypodium using TALENs. Molecular plant\| PubMed ID: 23288864	2013
Reviewer acknowledgement 2013. Mobile DNA\| PubMed ID: 23406649	2013
Plant genome engineering with sequence-specific nucleases. Annual review of plant biology\| PubMed ID: 23451779	2013
TALEN-based gene correction for epidermolysis bullosa. Molecular therapy : the journal of the American Society of Gene Therapy\| PubMed ID: 23546300	2013
Compact designer TALENs for efficient genome engineering. Nature communications\| PubMed ID: 23612303	2013
TALEN-mediated editing of the mouse Y chromosome. Nature biotechnology\| PubMed ID: 23666012	2013
TAL effector nucleases induce mutations at a pre-selected location in the genome of primary barley transformants. Plant molecular biology\| PubMed ID: 23689819	2013
TAL effectors: highly adaptable phytobacterial virulence factors and readily engineered DNA-targeting proteins. Trends in cell biology\| PubMed ID: 23707478	2013
Comparing zinc finger nucleases and transcription activator-like effector nucleases for gene targeting in Drosophila. G3 (Bethesda, Md.)\| PubMed ID: 23979928	2013
Targeted deletion and inversion of tandemly arrayed genes in Arabidopsis thaliana using zinc finger nucleases. G3 (Bethesda, Md.)\| PubMed ID: 23979943	2013
Targeted mutagenesis of Arabidopsis thaliana using engineered TAL effector nucleases. G3 (Bethesda, Md.)\| PubMed ID: 23979944	2013
Targeted mutagenesis for functional analysis of gene duplication in legumes. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 23996306	2013
Tailor-made mutations in Arabidopsis using zinc finger nucleases. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 24057367	2014
TALEN-engineered AR gene rearrangements reveal endocrine uncoupling of androgen receptor in prostate cancer. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24101480	2013
TAL effector specificity for base 0 of the DNA target is altered in a complex, effector- and assay-dependent manner by substitutions for the tryptophan in cryptic repeat -1. PloS one\| PubMed ID: 24312634	2013
DNA replicons for plant genome engineering. The Plant cell\| PubMed ID: 24443519	2014