Jan Lipfert

Department of Bionanoscience, Delft University of Technology

Affiliated withDelft University of Technology

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 16	2014

Other Publications

Article	Year
Protein misfolding and amyloid formation for the peptide GNNQQNY from yeast prion protein Sup35: simulation by reaction path annealing. Journal of molecular biology\| PubMed ID: 15896350	2005
Unusual compactness of a polyproline type II structure. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 16085707	2005
Expression, purification, and characterization of Thermotoga maritima membrane proteins for structure determination. Protein science : a publication of the Protein Society\| PubMed ID: 16597824	2006
Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution. Journal of molecular biology\| PubMed ID: 16949611	2006
Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae. Journal of molecular biology\| PubMed ID: 17118400	2007
Small-angle X-ray scattering from RNA, proteins, and protein complexes. Annual review of biophysics and biomolecular structure\| PubMed ID: 17284163	2007
Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory. Biophysical journal\| PubMed ID: 17604318	2007
Size and shape of detergent micelles determined by small-angle X-ray scattering. The journal of physical chemistry. B\| PubMed ID: 17924686	2007
Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids. Journal of the American Chemical Society\| PubMed ID: 17990882	2007
Long single alpha-helical tail domains bridge the gap between structure and function of myosin VI. Nature structural & molecular biology\| PubMed ID: 18511944	2008
Critical assessment of nucleic acid electrostatics via experimental and computational investigation of an unfolded state ensemble. Journal of the American Chemical Society\| PubMed ID: 18722445	2008
The complete VS ribozyme in solution studied by small-angle X-ray scattering. Structure (London, England : 1993)\| PubMed ID: 18786398	2008
A repulsive field: advances in the electrostatics of the ion atmosphere. Current opinion in chemical biology\| PubMed ID: 19081286	2008
Riboswitch conformations revealed by small-angle X-ray scattering. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 19381558	2009
Mixing and matching detergents for membrane protein NMR structure determination. Journal of the American Chemical Society\| PubMed ID: 19425578	2009
Quantitative modeling and optimization of magnetic tweezers. Biophysical journal\| PubMed ID: 19527664	2009
Single-molecule magnetic tweezers studies of type IB topoisomerases. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 19763943	2009
Do conformational biases of simple helical junctions influence RNA folding stability and specificity? RNA (New York, N.Y.)\| PubMed ID: 19850914	2009
The ligand-free state of the TPP riboswitch: a partially folded RNA structure. Journal of molecular biology\| PubMed ID: 19925806	2010
Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding. RNA (New York, N.Y.)\| PubMed ID: 20194520	2010
Torsional sensing of small-molecule binding using magnetic tweezers. Nucleic acids research\| PubMed ID: 20624816	2010
Quantitative guidelines for force calibration through spectral analysis of magnetic tweezers data. Biophysical journal\| PubMed ID: 20713015	2010
Use of small angle X-ray scattering (SAXS) to characterize conformational states of functional RNAs. Methods in enzymology\| PubMed ID: 20946792	2009
Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments. Nature methods\| PubMed ID: 20953173	2010
Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids. Nature communications\| PubMed ID: 21863006	2011
A method to track rotational motion for use in single-molecule biophysics. The Review of scientific instruments\| PubMed ID: 22047303	2011
Electromagnetic torque tweezers: a versatile approach for measurement of single-molecule twist and torque. Nano letters\| PubMed ID: 22642488	2012
Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scattering. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 23005779	2012
Studying genomic processes at the single-molecule level: introducing the tools and applications. Nature reviews. Genetics\| PubMed ID: 23150038	2013
Dependence of micelle size and shape on detergent alkyl chain length and head group. PloS one\| PubMed ID: 23667481	2013
Structural and torsional properties of the RAD51-dsDNA nucleoprotein filament. Nucleic acids research\| PubMed ID: 23703213	2013
Understanding Nucleic Acid-Ion Interactions. Annual review of biochemistry\| PubMed ID: 24606136	2014
Structure, mechanics, and binding mode heterogeneity of LEDGF/p75-DNA nucleoprotein complexes revealed by scanning force microscopy. Nanoscale\| PubMed ID: 24632996	2014