Ajay Jain

Department of Surgery, The Johns Hopkins University School of Medicine

Affiliated withThe Johns Hopkins University School of Medicine

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 118	2014

Other Publications

Article	Year
Fully automatic quantification of microarray image data. Genome research\| PubMed ID: 11827952	2002
Array-based comparative genomic hybridization for the differential diagnosis of renal cell cancer. Cancer research\| PubMed ID: 11861363	2002
A randomized controlled trial of cyanoacrylate versus alcohol injection in patients with isolated fundic varices. The American journal of gastroenterology\| PubMed ID: 12003381	2002
Genomic copy number analysis of non-small cell lung cancer using array comparative genomic hybridization: implications of the phosphatidylinositol 3-kinase pathway. Cancer research\| PubMed ID: 12097266	2002
Deriving quantitative conclusions from microarray expression data. Bioinformatics (Oxford, England)\| PubMed ID: 12117794	2002
Surflex: fully automatic flexible molecular docking using a molecular similarity-based search engine. Journal of medicinal chemistry\| PubMed ID: 12570372	2003
High-resolution analysis of paraffin-embedded and formalin-fixed prostate tumors using comparative genomic hybridization to genomic microarrays. The American journal of pathology\| PubMed ID: 12598311	2003
Array-based comparative genomic hybridization for genome-wide screening of DNA copy number in bladder tumors. Cancer research\| PubMed ID: 12782593	2003
Genome-wide-array-based comparative genomic hybridization reveals genetic homogeneity and frequent copy number increases encompassing CCNE1 in fallopian tube carcinoma. Oncogene\| PubMed ID: 12833150	2003
Shaping of tumor and drug-resistant genomes by instability and selection. Oncogene\| PubMed ID: 12853973	2003
Synergistic effect of a granulocyte-macrophage colony-stimulating factor-transduced tumor vaccine and systemic interleukin-2 in the treatment of murine colorectal cancer hepatic metastases. Annals of surgical oncology\| PubMed ID: 12900373	2003
Compositional structure of repetitive elements is quantitatively related to co-expression of gene pairs. Journal of molecular biology\| PubMed ID: 12948482	2003
Genome-wide array CGH analysis of murine neuroblastoma reveals distinct genomic aberrations which parallel those in human tumors. Cancer research\| PubMed ID: 14500357	2003
Determinants of BRAF mutations in primary melanomas. Journal of the National Cancer Institute\| PubMed ID: 14679157	2003
Ligand-based structural hypotheses for virtual screening. Journal of medicinal chemistry\| PubMed ID: 14761196	2004
Idiopathic hypereosinophilic syndrome--unusual presentation. Indian pediatrics\| PubMed ID: 14767090	2004
Removal of chlorophenols using industrial wastes. Environmental science & technology\| PubMed ID: 14998037	2004
High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization. Carcinogenesis\| PubMed ID: 15001537	2004
Whole genome scanning identifies genotypes associated with recurrence and metastasis in prostate tumors. Human molecular genetics\| PubMed ID: 15138198	2004
Virtual screening in lead discovery and optimization. Current opinion in drug discovery & development\| PubMed ID: 15338948	2004
Expression of the tumor suppressor gene ARHI in epithelial ovarian cancer is associated with increased expression of p21WAF1/CIP1 and prolonged progression-free survival. Clinical cancer research : an official journal of the American Association for Cancer Research\| PubMed ID: 15475444	2004
Elimination of hepatic metastases of colon cancer cells via p53-independent cross-talk between irinotecan and Apo2 ligand/TRAIL. Cancer research\| PubMed ID: 15604280	2004
Mapping segmental and sequence variations among laboratory mice using BAC array CGH. Genome research\| PubMed ID: 15687294	2005
Success of a multidisciplinary heart failure clinic for initiation and up-titration of key therapeutic agents. European journal of heart failure\| PubMed ID: 15718181	2005
Fractional genomic alteration detected by array-based comparative genomic hybridization independently predicts survival after hepatic resection for metastatic colorectal cancer. Clinical cancer research : an official journal of the American Association for Cancer Research\| PubMed ID: 15756001	2005
Significance of ST depression during exercise treadmill stress and adenosine infusion myocardial perfusion imaging. The international journal of cardiovascular imaging\| PubMed ID: 16015437	2005
A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 16085708	2005
Hepatitis B vaccine in the EPI schedule. Indian journal of pediatrics\| PubMed ID: 16131770	2005
Pathway recognition and augmentation by computational analysis of microarray expression data. Bioinformatics (Oxford, England)\| PubMed ID: 16278238	2006
Selective targeting of antitumor immune responses with engineered live-attenuated Listeria monocytogenes. Cancer research\| PubMed ID: 16424046	2006
Resistance of cancers to immunologic cytotoxicity and adoptive immunotherapy via X-linked inhibitor of apoptosis protein expression and coexisting defects in mitochondrial death signaling. Cancer research\| PubMed ID: 16452233	2006
A deterministic motif finding algorithm with application to the human genome. Bioinformatics (Oxford, England)\| PubMed ID: 16455748	2006
Breast tumor copy number aberration phenotypes and genomic instability. BMC cancer\| PubMed ID: 16620391	2006
Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel. Molecular cancer therapeutics\| PubMed ID: 16648555	2006
Robust ligand-based modeling of the biological targets of known drugs. Journal of medicinal chemistry\| PubMed ID: 16686535	2006
Acute myocarditis presenting as acute coronary syndrome: role of early cardiac magnetic resonance in its diagnosis. Heart (British Cardiac Society)\| PubMed ID: 21106555	2011
Parameter estimation for scoring protein-ligand interactions using negative training data. Journal of medicinal chemistry\| PubMed ID: 17004701	2006
Phosphate starvation responses are mediated by sugar signaling in Arabidopsis. Planta\| PubMed ID: 17033812	2007
Scoring functions for protein-ligand docking. Current protein & peptide science\| PubMed ID: 17073693	2006
the coronary venous system: an alternative route of access to the myocardium. The Journal of invasive cardiology\| PubMed ID: 17090824	2006
New developments in coronary stent technology. Journal of interventional cardiology\| PubMed ID: 17107363	2006
Genomic and transcriptional aberrations linked to breast cancer pathophysiologies. Cancer cell\| PubMed ID: 17157792	2006
Role of cancer antigen-125 from pleural & ascitic fluid samples in non malignant conditions. The Indian journal of medical research\| PubMed ID: 17332654	2007
Differential effects of sucrose and auxin on localized phosphate deficiency-induced modulation of different traits of root system architecture in Arabidopsis. Plant physiology\| PubMed ID: 17369438	2007
Surflex-Dock 2.1: robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search. Journal of computer-aided molecular design\| PubMed ID: 17387436	2007
Ciprofloxacin-induced cholestatic jaundice. Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology\| PubMed ID: 17401251	2007
Functional characterization of LePT4: a phosphate transporter in tomato with mycorrhiza-enhanced expression. Journal of experimental botany\| PubMed ID: 17545228	2007
A clinicoradiologic analysis of symptomatic craniofacial fibro-osseous lesions. Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery\| PubMed ID: 17547981	2007
Acute viral hepatitis E and Japanese encephalitis: an unusual co-occurrence. Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology\| PubMed ID: 17558086	2007
Acute pancreatitis and its association with hyperhomocysteinemia. Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology\| PubMed ID: 17558088	2007
Phosphate differentially regulates 14-3-3 family members and GRF9 plays a role in Pi-starvation induced responses. Planta\| PubMed ID: 17598127	2007
Selective electrochemical sensor for copper (II) ion based on chelating ionophores. Analytica chimica acta\| PubMed ID: 17723567	2006
Update on drug-eluting stents: as good as it gets? Clinical medicine (London, England)\| PubMed ID: 17882862	2007
Live attenuated Listeria monocytogenes effectively treats hepatic colorectal cancer metastases and is strongly enhanced by depletion of regulatory T cells. Cancer research\| PubMed ID: 17942940	2007
Real-world safety and efficacy of the endeavor zotarolimus-eluting stent: early data from the E-Five Registry. The American journal of cardiology\| PubMed ID: 17950836	2007
The role of ultrasound-guided fine-needle aspiration of axillary nodes in the staging of breast cancer. Annals of surgical oncology\| PubMed ID: 17985188	2008
Effects of inductive bias on computational evaluations of ligand-based modeling and on drug discovery. Journal of computer-aided molecular design\| PubMed ID: 18074107	2008
Bias, reporting, and sharing: computational evaluations of docking methods. Journal of computer-aided molecular design\| PubMed ID: 18075713	2008
Customizing scoring functions for docking. Journal of computer-aided molecular design\| PubMed ID: 18273558	2008
Clinical challenges and images in GI. Aortitis as a rare complication of Crohn's disease. Gastroenterology\| PubMed ID: 18325384	2008
Recommendations for evaluation of computational methods. Journal of computer-aided molecular design\| PubMed ID: 18338228	2008
Bilateral first and second branchial cleft fistulas: a case report. Ear, nose, & throat journal\| PubMed ID: 18572788	2008
Accurate and interpretable computational modeling of chemical mutagenicity. Journal of chemical information and modeling\| PubMed ID: 18771257	2008
Molecular cloning and characterization of phosphate (Pi) responsive genes in Gulf ryegrass (Lolium multiflorum L.): a Pi hyperaccumulator. Plant molecular biology\| PubMed ID: 18821059	2009
Manganese (II) selective PVC based membrane sensor using a Schiff base. Talanta\| PubMed ID: 19071580	2007
Aluminum(III) selective potentiometric sensor based on morin in poly(vinyl chloride) matrix. Talanta\| PubMed ID: 19071785	2007
Ni(2+) selective sensors based on meso-tetrakis-{4-[tris-(4-allyl dimethylsilyl-phenyl)-silyl]-phenyl}porphyrin and (sal)(2)trien in poly(vinyl chloride) matrix. Talanta\| PubMed ID: 19073105	2007
Colon cancer in a 16-year-old girl: signet-ring cell carcinoma without microsatellite instability--an unusual suspect. Journal of pediatric gastroenterology and nutrition\| PubMed ID: 19172134	2009
Image of the month. Gastrohepatic fistula following TACE for HCC. Archives of surgery (Chicago, Ill. : 1960)\| PubMed ID: 19289671	2009
Successful exclusion of large post-surgical pseudoaneurysms of the ascending aorta by a percutaneous approach. The Annals of thoracic surgery\| PubMed ID: 19324175	2009
Effects of protein conformation in docking: improved pose prediction through protein pocket adaptation. Journal of computer-aided molecular design\| PubMed ID: 19340588	2009
Prevention of thrombus embolization during primary percutaneous intervention using a novel mesh covered stent. Catheterization and cardiovascular interventions : official journal of the Society for Cardiac Angiography & Interventions\| PubMed ID: 19360871	2009
Variations in the composition of gelling agents affect morphophysiological and molecular responses to deficiencies of phosphate and other nutrients. Plant physiology\| PubMed ID: 19386810	2009
Magellan: a web based system for the integrated analysis of heterogeneous biological data and annotations; application to DNA copy number and expression data in ovarian cancer. Cancer informatics\| PubMed ID: 19458754	2006
Effect of slow- and fast-breathing exercises on autonomic functions in patients with essential hypertension. Journal of alternative and complementary medicine (New York, N.Y.)\| PubMed ID: 19534616	2009
Complete removal of extensive right coronary artery thrombus by the use of an aspiration catheter to facilitate primary angioplasty. EuroIntervention : journal of EuroPCR in collaboration with the Working Group on Interventional Cardiology of the European Society of Cardiology\| PubMed ID: 19737704	2007
Integrin alpha2 mediates selective metastasis to the liver. Cancer research\| PubMed ID: 19738067	2009
Physical binding pocket induction for affinity prediction. Journal of medicinal chemistry\| PubMed ID: 19754201	2009
Histone H2A.Z regulates the expression of several classes of phosphate starvation response genes but not as a transcriptional activator. Plant physiology\| PubMed ID: 19897606	2010
Indian task force for celiac disease: current status. World journal of gastroenterology : WJG\| PubMed ID: 20027674	2009
Role of intravenous naloxone in severe pruritus of acute cholestasis. Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology\| PubMed ID: 20107967	2009
Histopathologic basis for the favorable survival after resection of intraductal papillary mucinous neoplasm-associated invasive adenocarcinoma of the pancreas. Annals of surgery\| PubMed ID: 20142731	2010
Cervical necrotizing fasciitis: Our experience with 11 cases and our technique for surgical debridement. Ear, nose, & throat journal\| PubMed ID: 20155678	2010
Molecular shape and medicinal chemistry: a perspective. Journal of medicinal chemistry\| PubMed ID: 20158188	2010
Rectal ulcer with an elusive diagnosis: all that ulcers is not Crohn disease. Journal of pediatric gastroenterology and nutrition\| PubMed ID: 20410839	2010
Twelve-month outcomes in patients with diabetes implanted with a zotarolimus-eluting stent: results from the E-Five Registry. Heart (British Cardiac Society)\| PubMed ID: 20478863	2010
In planta engineering of gold nanoparticles of desirable geometries by modulating growth conditions: an environment-friendly approach. Environmental science & technology\| PubMed ID: 20698550	2010
QMOD: physically meaningful QSAR. Journal of computer-aided molecular design\| PubMed ID: 20721601	2010
Circulatory support in severe aortic stenosis. Heart (British Cardiac Society)\| PubMed ID: 21266367	2011
Primary percutaneous coronary intervention for ST-elevation myocardial infarction in a patient with a single coronary artery arising from the right aortic sinus. The Journal of invasive cardiology\| PubMed ID: 21364254	2011
Percutaneous occlusion of the left atrial appendage in non-valvular atrial fibrillation for the prevention of thromboembolism: NICE guidance. Heart (British Cardiac Society)\| PubMed ID: 21378010	2011
Clinical outcomes by geographic region for patients implanted with the zotarolimus-eluting stent. Arquivos brasileiros de cardiologia\| PubMed ID: 21468534	2011
Arabidopsis Pht1;5 mobilizes phosphate between source and sink organs and influences the interaction between phosphate homeostasis and ethylene signaling. Plant physiology\| PubMed ID: 21628630	2011
Giant Brunner's gland adenoma of the duodenal bulb presenting with ampullary and duodenal obstruction mimicking pancreatic malignancy. JOP : Journal of the pancreas\| PubMed ID: 21737907	2011
Surface-based protein binding pocket similarity. Proteins\| PubMed ID: 21769944	2011
Characterization of the phosphate starvation-induced glycerol-3-phosphate permease gene family in Arabidopsis. Plant physiology\| PubMed ID: 21788361	2011
Chemical structural novelty: on-targets and off-targets. Journal of medicinal chemistry\| PubMed ID: 21916467	2011
Percutaneous balloon pericardiotomy for recurrent malignant pericardial effusion. Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer\| PubMed ID: 22088990	2011
Thrombus entrapment by a novel mesh-covered stent in ST-segment elevation myocardial infarction. Journal of the American College of Cardiology\| PubMed ID: 22093516	2011
Enteral bile acid treatment improves parenteral nutrition-related liver disease and intestinal mucosal atrophy in neonatal pigs. American journal of physiology. Gastrointestinal and liver physiology\| PubMed ID: 22094603	2012
Intracoronary thrombolytic therapy: A Treatment Option for Failed Mechanical Thrombectomy. Catheterization and cardiovascular interventions : official journal of the Society for Cardiac Angiography & Interventions\| PubMed ID: 22109966	2011
Does your model weigh the same as a duck? Journal of computer-aided molecular design\| PubMed ID: 22187141	2012
Successful recanalization of chronic total occlusions is associated with improved long-term survival. JACC. Cardiovascular interventions\| PubMed ID: 22516393	2012
Outcomes in patients with renal impairment undergoing percutaneous coronary intervention and implantation of the Endeavor zotarolimus-eluting stent: 1- and 2-year data from the E-Five Regist... Catheterization and cardiovascular interventions : official journal of the Society for Cardiac Angiography & Interventions\| PubMed ID: 22517785	2012
Surflex-Dock: Docking benchmarks and real-world application. Journal of computer-aided molecular design\| PubMed ID: 22569590	2012
Deployment of drug-eluting stents for isolated proximal lad disease is associated with lower major adverse cardiac events and no increase in stent thrombosis when compared with bare metal st... Catheterization and cardiovascular interventions : official journal of the Society for Cardiac Angiography & Interventions\| PubMed ID: 22707383	2012
Autotymapanomastoidectomy in a case of cholesteatoma with foreign body. Indian journal of otolaryngology and head and neck surgery : official publication of the Association of Otolaryngologists of India\| PubMed ID: 22754843	2011
Increased morbidity in acute viral hepatitis with glucose-6-phosphate dehydrogenase deficiency. Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology\| PubMed ID: 22869048	2013
Transcriptional regulation of phosphate acquisition by higher plants. Cellular and molecular life sciences : CMLS\| PubMed ID: 22899310	2012
Fully recombinant IgG2a Fc multimers (stradomers) effectively treat collagen-induced arthritis and prevent idiopathic thrombocytopenic purpura in mice. Arthritis research & therapy\| PubMed ID: 22906120	2012
Gastric ulcers due to varicella-zoster reactivation. Pediatrics\| PubMed ID: 23045567	2012
Iterative refinement of a binding pocket model: active computational steering of lead optimization. Journal of medicinal chemistry\| PubMed ID: 23046104	2012
Safety and feasibility of hospital discharge 2 days following primary percutaneous intervention for ST-segment elevation myocardial infarction. Heart (British Cardiac Society)\| PubMed ID: 23053711	2012
Survey of inflammatory bowel diseases in India. Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology\| PubMed ID: 23073755	2012
Indian Society of Gastroenterology consensus on ulcerative colitis. Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology\| PubMed ID: 23096266	2012
Acute febrile illness in cirrhosis - thinking beyond spontaneous bacterial peritonitis! Tropical doctor\| PubMed ID: 23117956	2012
Psychological implications in ENT diseases. Indian journal of otolaryngology and head and neck surgery : official publication of the Association of Otolaryngologists of India\| PubMed ID: 23120613	2009
Inflammatory bowel disease in central India: a single centre experience over five years. Tropical doctor\| PubMed ID: 23129726	2012
Influence of female sex on long-term mortality after acute coronary syndromes treated by percutaneous coronary intervention: a cohort study of 7304 patients. Coronary artery disease\| PubMed ID: 23299565	2013
Assessment of neoadjuvant chemotherapy on operative parameters and outcome in patients with peritoneal dissemination from high-grade appendiceal cancer. Annals of surgical oncology\| PubMed ID: 23456383	2013
Management of cardiogenic shock complicating acute coronary syndromes. Heart (British Cardiac Society)\| PubMed ID: 23468511	2013
Bacterial skin infections in cirrhotics. Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology\| PubMed ID: 23526374	2014
Effects of deficiency and excess of zinc on morphophysiological traits and spatiotemporal regulation of zinc-responsive genes reveal incidence of cross talk between micro- and macronutrients... Environmental science & technology\| PubMed ID: 23590825	2013
Clinical outcomes after myocardial revascularization according to operator training status: cohort study of 22,697 patients undergoing percutaneous coronary intervention or coronary artery b... European heart journal\| PubMed ID: 23677845	2013
A high throughput method for enrichment of natural killer cells and lymphocytes and assessment of in vitro cytotoxicity. Journal of immunological methods\| PubMed ID: 23680234	2013
Out-of-hours primary percutaneous coronary intervention for ST-elevation myocardial infarction is not associated with excess mortality: a study of 3347 patients treated in an integrated card... BMJ open\| PubMed ID: 23811175	2013
Evaluation of autonomic functions in subclinical hypothyroid and hypothyroid patients. Indian journal of endocrinology and metabolism\| PubMed ID: 23869303	2013
Tumour antigen targeted monoclonal antibodies incorporating a novel multimerisation domain significantly enhance antibody dependent cellular cytotoxicity against colon cancer. European journal of cancer (Oxford, England : 1990)\| PubMed ID: 23871153	2013
Contemporary analysis of incidence and outcomes of stent thrombosis presenting as ST elevation myocardial infarction in a primary percutaneous coronary intervention cohort. The American journal of cardiology\| PubMed ID: 24012030	2013
Expansion of screening mammography in the Veterans Health Administration: implications for breast cancer treatment. JAMA surgery\| PubMed ID: 24048217	2013
Prognostic impact of anaemia on patients with ST-elevation myocardial infarction treated by primary PCI. Coronary artery disease\| PubMed ID: 24051679	2014
Stress, health and well-being: the mediating role of employee and organizational commitment. International journal of environmental research and public health\| PubMed ID: 24157512	2013
Protein function annotation by local binding site surface similarity. Proteins\| PubMed ID: 24166661	2014
A structure-guided approach for protein pocket modeling and affinity prediction. Journal of computer-aided molecular design\| PubMed ID: 24214361	2013
Prediction of off-target drug effects through data fusion. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing\| PubMed ID: 24297543	2014
Advances in alpha-1-antitrypsin deficiency liver disease. Current gastroenterology reports\| PubMed ID: 24338605	2014
Ethylene Response Factor070 regulates root development and phosphate starvation-mediated responses. Plant physiology\| PubMed ID: 24394776	2014
Isolated common bile duct avulsion following blunt abdominal trauma. The Indian journal of surgery\| PubMed ID: 24426563	2013
Arabidopsis thaliana mutant lpsi reveals impairment in the root responses to local phosphate availability. Plant physiology and biochemistry : PPB / Société française de physiologie végétale\| PubMed ID: 24561248	2014
Biologic vs synthetic inguinal hernia repair: 1-year results of a randomized double-blinded trial. Journal of the American College of Surgeons\| PubMed ID: 24655865	2014
Relationship Between Changes in Serum Levels of Keratin 18 and Changes in Liver Histology in Children and Adults With Nonalcoholic Fatty Liver Disease. Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association\| PubMed ID: 24846279	2014
Pleuroscopy in 'Idiopathic' eosinophilic pleural effusions. The clinical respiratory journal\| PubMed ID: 24865235	2014
Radial primary percutaneous coronary intervention is independently associated with decreased long-term mortality in high-risk ST-elevation myocardial infarction patients. Journal of cardiovascular medicine (Hagerstown, Md.)\| PubMed ID: 25000249	2014
Resection and radiofrequency ablation for hepatocellular cancer. The Journal of surgical research\| PubMed ID: 25103638	2014