Michael McClelland

University of California, Irvine

Affiliated withUniversity of California, Irvine

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 31	2014

Other Publications

Article	Year
DNA microarray-based typing of an atypical monophasic Salmonella enterica serovar. Journal of clinical microbiology\| PubMed ID: 12037067	2002
Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 12072558	2002
Bile acids mimic oxidative stress induced upregulation of thioredoxin reductase in colon cancer cell lines. Carcinogenesis\| PubMed ID: 12151345	2002
Microarray analysis identifies Salmonella genes belonging to the low-shear modeled microgravity regulon. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 12370447	2002
Low-Shear modeled microgravity alters the Salmonella enterica serovar typhimurium stress response in an RpoS-independent manner. Applied and environmental microbiology\| PubMed ID: 12406731	2002
A non-redundant microarray of genes for two related bacteria. Nucleic acids research\| PubMed ID: 12655003	2003
Global regulation by CsrA in Salmonella typhimurium. Molecular microbiology\| PubMed ID: 12791144	2003
EnteriX 2003: Visualization tools for genome alignments of Enterobacteriaceae. Nucleic acids research\| PubMed ID: 12824359	2003
Lateral gene transfer in Salmonella. Microbes and infection / Institut Pasteur\| PubMed ID: 12941390	2003
Microarray analysis using RNA arbitrarily primed PCR. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 12958507	2003
Regulation of Salmonella typhimurium virulence gene expression by cationic antimicrobial peptides. Molecular microbiology\| PubMed ID: 14507376	2003
Detection of a Salmonella enterica serovar California strain spreading in spanish feed mills and genetic characterization with DNA microarrays. Applied and environmental microbiology\| PubMed ID: 14660409	2003
Egr1 signaling in prostate cancer. Cancer biology & therapy\| PubMed ID: 14688464	2003
In silico dissection of cell-type-associated patterns of gene expression in prostate cancer. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 14722351	2004
DNA amplification and rearrangements in archival Salmonella enterica serovar Typhimurium LT2 cultures. Journal of bacteriology\| PubMed ID: 14996798	2004
Gene expression patterns during swarming in Salmonella typhimurium: genes specific to surface growth and putative new motility and pathogenicity genes. Molecular microbiology\| PubMed ID: 15049819	2004
Host restriction of Salmonella enterica serotype Typhimurium pigeon isolates does not correlate with loss of discrete genes. Journal of bacteriology\| PubMed ID: 15090502	2004
Flagellin fusion proteins as adjuvants or vaccines induce specific immune responses. Infection and immunity\| PubMed ID: 15102791	2004
Salmonella enterica serovar Typhi strains from which SPI7, a 134-kilobase island with genes for Vi exopolysaccharide and other functions, has been deleted. Journal of bacteriology\| PubMed ID: 15126484	2004
Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid. Nature genetics\| PubMed ID: 15531882	2004
Erwinia toletana sp. nov., associated with Pseudomonas savastanoi-induced tree knots. International journal of systematic and evolutionary microbiology\| PubMed ID: 15545461	2004
Identification of promoters bound by c-Jun/ATF2 during rapid large-scale gene activation following genotoxic stress. Molecular cell\| PubMed ID: 15546613	2004
Pigeon-associated strains of Salmonella enterica serovar Typhimurium phage type DT2 have genomic rearrangements at rRNA operons. Infection and immunity\| PubMed ID: 15557664	2004
Host gene expression changes and DNA amplification during temperate phage induction. Journal of bacteriology\| PubMed ID: 15687213	2005
Mechanisms of sulindac-induced apoptosis and cell cycle arrest. Cancer letters\| PubMed ID: 15694660	2005
Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP/PhoQ. Molecular microbiology\| PubMed ID: 15813739	2005
Alternative sigma factor interactions in Salmonella: sigma and sigma promote antioxidant defences by enhancing sigma levels. Molecular microbiology\| PubMed ID: 15819634	2005
Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium. Journal of molecular evolution\| PubMed ID: 15883881	2005
Enhanced microarray performance using low complexity representations of the transcriptome. Nucleic acids research\| PubMed ID: 15987785	2005
Correlation of phenotype with the genotype of egg-contaminating Salmonella enterica serovar Enteritidis. Applied and environmental microbiology\| PubMed ID: 16085829	2005
Survey of differentially methylated promoters in prostate cancer cell lines. Neoplasia (New York, N.Y.)\| PubMed ID: 16207477	2005
Vertical arrays: microarrays of complex mixtures of nucleic acids. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 16264224	2006
WebArray: an online platform for microarray data analysis. BMC bioinformatics\| PubMed ID: 16371165	2005
"Promoter array" studies identify cohorts of genes directly regulated by methylation, copy number change, or transcription factor binding in human cancer cells. Annals of the New York Academy of Sciences\| PubMed ID: 16394135	2005
DNA microarray detection of antimicrobial resistance genes in diverse bacteria. International journal of antimicrobial agents\| PubMed ID: 16427254	2006
Transcriptome of Salmonella enterica serovar Typhi within macrophages revealed through the selective capture of transcribed sequences. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 16443683	2006
Messenger RNAs under differential translational control in Ki-ras-transformed cells. Molecular cancer research : MCR\| PubMed ID: 16446406	2006
Identification of new flagellar genes of Salmonella enterica serovar Typhimurium. Journal of bacteriology\| PubMed ID: 16513753	2006
Salmonella enterica serovar Typhimurium requires the Lpf, Pef, and Tafi fimbriae for biofilm formation on HEp-2 tissue culture cells and chicken intestinal epithelium. Infection and immunity\| PubMed ID: 16714543	2006
Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science (New York, N.Y.)\| PubMed ID: 16763111	2006
Identification of specific gene sequences conserved in contemporary epidemic strains of Salmonella enterica. Applied and environmental microbiology\| PubMed ID: 16963552	2006
Uncovering a large set of genes that affect surface motility in Salmonella enterica serovar Typhimurium. Journal of bacteriology\| PubMed ID: 16980469	2006
PhoP-induced genes within Salmonella pathogenicity island 1. Journal of bacteriology\| PubMed ID: 16980492	2006
[Salmonella transcriptome during macrophage infection]. Médecine sciences : M/S\| PubMed ID: 17026919	2006
FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s). Journal of bacteriology\| PubMed ID: 17220229	2007
Delineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis. Journal of bacteriology\| PubMed ID: 17483226	2007
Silencing of xenogeneic DNA by H-NS-facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA. Genes & development\| PubMed ID: 17575047	2007
Microarray analysis of Mu transposition in Salmonella enterica, serovar Typhimurium: transposon exclusion by high-density DNA binding proteins. Molecular microbiology\| PubMed ID: 17850262	2007
The RcsCDB signaling system and swarming motility in Salmonella enterica serovar typhimurium: dual regulation of flagellar and SPI-2 virulence genes. Journal of bacteriology\| PubMed ID: 17905992	2007
Toxicogenomic analysis incorporating operon-transcriptional coupling and toxicant concentration-expression response: analysis of MX-treated Salmonella. BMC bioinformatics\| PubMed ID: 17925033	2007
Chromatin modifications induced by PML-RARalpha repress critical targets in leukemogenesis as analyzed by ChIP-Chip. Blood\| PubMed ID: 18024792	2008
Evaluation of nested PCR in detection of Helicobacter pylori targeting a highly conserved gene: HSP60. Helicobacter\| PubMed ID: 18205663	2008
Nitric oxide antagonizes the acid tolerance response that protects Salmonella against innate gastric defenses. PloS one\| PubMed ID: 18350168	2008
Determination of the gene content of Salmonella genomes by microarray analysis. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 18363233	2007
Assessment of gene expression in many samples using vertical arrays. Nucleic acids research\| PubMed ID: 18474526	2008
Salmonella serovar identification using PCR-based detection of gene presence and absence. Journal of clinical microbiology\| PubMed ID: 18524964	2008
Microarray for molecular typing of Salmonella enterica serovars. Molecular and cellular probes\| PubMed ID: 18554865	2008
Salmonella promoters preferentially activated inside tumors. Cancer research\| PubMed ID: 18559530	2008
The wisdom of the commons: ensemble tree classifiers for prostate cancer prognosis. Bioinformatics (Oxford, England)\| PubMed ID: 18628288	2009
The CorA Mg2+ channel is required for the virulence of Salmonella enterica serovar typhimurium. Journal of bacteriology\| PubMed ID: 18676664	2008
Egr1 regulates the coordinated expression of numerous EGF receptor target genes as identified by ChIP-on-chip. Genome biology\| PubMed ID: 19032775	2008
Media ion composition controls regulatory and virulence response of Salmonella in spaceflight. PloS one\| PubMed ID: 19079590	2008
Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium. PLoS pathogens\| PubMed ID: 19229334	2009
Genome-wide analysis of the PreA/PreB (QseB/QseC) regulon of Salmonella enterica serovar Typhimurium. BMC microbiology\| PubMed ID: 19236707	2009
Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation. PloS one\| PubMed ID: 19277208	2009
Novel genetic tools for studying food-borne Salmonella. Current opinion in biotechnology\| PubMed ID: 19285855	2009
Analysis of pools of targeted Salmonella deletion mutants identifies novel genes affecting fitness during competitive infection in mice. PLoS pathogens\| PubMed ID: 19578432	2009
WebArrayDB: cross-platform microarray data analysis and public data repository. Bioinformatics (Oxford, England)\| PubMed ID: 19602526	2009
Development of a DNA microarray to detect antimicrobial resistance genes identified in the National Center for Biotechnology Information database. Microbial drug resistance (Larchmont, N.Y.)\| PubMed ID: 19916789	2010
Fitness costs and stability of a high-level ciprofloxacin resistance phenotype in Salmonella enterica serotype enteritidis: reduced infectivity associated with decreased expression of Salmon... Antimicrobial agents and chemotherapy\| PubMed ID: 19917752	2010
Analyzing microarray data using WebArray. Cold Spring Harbor protocols\| PubMed ID: 20147236	2009
Spontaneous excision of the Salmonella enterica serovar Enteritidis-specific defective prophage-like element phiSE14. Journal of bacteriology\| PubMed ID: 20172996	2010
Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. PloS one\| PubMed ID: 20221447	2010
High-throughput screening for salmonella avirulent mutants that retain targeting of solid tumors. Cancer research\| PubMed ID: 20231149	2010
Evaluating oligonucleotide properties for DNA microarray probe design. Nucleic acids research\| PubMed ID: 20236987	2010
Profiling of histone H3 lysine 9 trimethylation levels predicts transcription factor activity and survival in acute myeloid leukemia. Blood\| PubMed ID: 20498303	2010
Distinct DNA methylation profiles between adenocarcinoma and squamous cell carcinoma of human uterine cervix. Oncology research\| PubMed ID: 20524398	2010
TabSQL: a MySQL tool to facilitate mapping user data to public databases. BMC bioinformatics\| PubMed ID: 20573251	2010
The AI-2-dependent regulator LsrR has a limited regulon in Salmonella Typhimurium. Cell research\| PubMed ID: 20628367	2010
In silico estimates of tissue components in surgical samples based on expression profiling data. Cancer research\| PubMed ID: 20663908	2010
Humanized nonobese diabetic-scid IL2rgammanull mice are susceptible to lethal Salmonella Typhi infection. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 20713716	2010
Specific responses of Salmonella enterica to tomato varieties and fruit ripeness identified by in vivo expression technology. PloS one\| PubMed ID: 20824208	2010
Stem cell-like micro-RNA signature driven by Myc in aggressive liver cancer. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 21059911	2010
The CpxR/CpxA two-component system up-regulates two Tat-dependent peptidoglycan amidases to confer bacterial resistance to antimicrobial peptide. The Journal of biological chemistry\| PubMed ID: 21149452	2011
Analysis of Salmonella enterica serotype paratyphi A gene expression in the blood of bacteremic patients in Bangladesh. PLoS neglected tropical diseases\| PubMed ID: 21151879	2010
Increased HDAC1 deposition at hematopoietic promoters in AML and its association with patient survival. Leukemia research\| PubMed ID: 21176959	2011
Abrogation of the twin arginine transport system in Salmonella enterica serovar Typhimurium leads to colonization defects during infection. PloS one\| PubMed ID: 21298091	2011
Analysis of the ArcA regulon in anaerobically grown Salmonella enterica sv. Typhimurium. BMC microbiology\| PubMed ID: 21418628	2011
Diagnosis of prostate cancer using differentially expressed genes in stroma. Cancer research\| PubMed ID: 21459804	2011
Olympus PlasmaButton transurethral vaporization technique for benign prostatic hyperplasia. The Canadian journal of urology\| PubMed ID: 21504652	2011
Salmonella exploits Arl8B-directed kinesin activity to promote endosome tubulation and cell-to-cell transfer. Cellular microbiology\| PubMed ID: 21824248	2011
Hydrogen-stimulated carbon acquisition and conservation in Salmonella enterica serovar Typhimurium. Journal of bacteriology\| PubMed ID: 21856852	2011
Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium. BMC genomics\| PubMed ID: 21867535	2011
The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets. BMC microbiology\| PubMed ID: 22017966	2011
The accuracy of survival time prediction for patients with glioma is improved by measuring mitotic spindle checkpoint gene expression. PloS one\| PubMed ID: 22022424	2011
Infection of mice by Salmonella enterica serovar Enteritidis involves additional genes that are absent in the genome of serovar Typhimurium. Infection and immunity\| PubMed ID: 22083712	2012
In vivo expression of Salmonella enterica serotype Typhi genes in the blood of patients with typhoid fever in Bangladesh. PLoS neglected tropical diseases\| PubMed ID: 22180799	2011
Molecular and cellular characterization of a Salmonella enterica serovar Paratyphi a outbreak strain and the human immune response to infection. Clinical and vaccine immunology : CVI\| PubMed ID: 22190395	2012
Genome-wide analysis of histone H3 acetylation patterns in AML identifies PRDX2 as an epigenetically silenced tumor suppressor gene. Blood\| PubMed ID: 22207736	2012
Gene expression analysis of Salmonella enterica Enteritidis Nal(R) and Salmonella enterica Kentucky 3795 exposed to HCl and acetic acid in rich medium. Foodborne pathogens and disease\| PubMed ID: 22356573	2012
Requirement of siderophore biosynthesis for plant colonization by Salmonella enterica. Applied and environmental microbiology\| PubMed ID: 22522683	2012
Hypochlorous acid and hydrogen peroxide-induced negative regulation of Salmonella enterica serovar Typhimurium ompW by the response regulator ArcA. BMC microbiology\| PubMed ID: 22545862	2012
Virulence of 32 Salmonella strains in mice. PloS one\| PubMed ID: 22558320	2012
Selection of Salmonella enterica serovar Typhi genes involved during interaction with human macrophages by screening of a transposon mutant library. PloS one\| PubMed ID: 22574205	2012
High-throughput comparison of gene fitness among related bacteria. BMC genomics\| PubMed ID: 22646920	2012
The NsrR regulon in nitrosative stress resistance of Salmonella enterica serovar Typhimurium. Molecular microbiology\| PubMed ID: 22831173	2012
Expression changes in the stroma of prostate cancer predict subsequent relapse. PloS one\| PubMed ID: 22870216	2012
A sample selection strategy to boost the statistical power of signature detection in cancer expression profile studies. Anti-cancer agents in medicinal chemistry\| PubMed ID: 22934703	2013
Global transcriptional analysis of dehydrated Salmonella enterica serovar Typhimurium. Applied and environmental microbiology\| PubMed ID: 22941081	2012
An accurate prostate cancer prognosticator using a seven-gene signature plus Gleason score and taking cell type heterogeneity into account. PloS one\| PubMed ID: 23028830	2012
Live attenuated S. Typhimurium vaccine with improved safety in immuno-compromised mice. PloS one\| PubMed ID: 23029007	2012
Comparative analysis of genome sequences covering the seven cronobacter species. PloS one\| PubMed ID: 23166675	2012
L-asparaginase II produced by Salmonella typhimurium inhibits T cell responses and mediates virulence. Cell host & microbe\| PubMed ID: 23245323	2012
The intestinal fatty acid propionate inhibits Salmonella invasion through the post-translational control of HilD. Molecular microbiology\| PubMed ID: 23289537	2013
Characterization of an acid-inducible sulfatase in Salmonella enterica serovar Typhimurium. Applied and environmental microbiology\| PubMed ID: 23315743	2013
Consequences of disrupting Salmonella AI-2 signaling on interactions within soft rots. Phytopathology\| PubMed ID: 23324045	2013
Evolutionary Genomics of Salmonella enterica Subspecies. mBio\| PubMed ID: 23462113	2013
Virulence gene profiling and pathogenicity characterization of non-typhoidal Salmonella accounted for invasive disease in humans. PloS one\| PubMed ID: 23505508	2013
A single step multiplex PCR for identification of six diarrheagenic E. coli pathotypes and Salmonella. International journal of medical microbiology : IJMM\| PubMed ID: 23562277	2013
Natural products and transforming growth factor-beta (TGF-β) signaling in cancer development and progression. Current cancer drug targets\| PubMed ID: 23597196	2013
Mapping and regulation of genes within Salmonella pathogenicity island 12 that contribute to in vivo fitness of Salmonella enterica Serovar Typhimurium. Infection and immunity\| PubMed ID: 23630960	2013
The EAL domain containing protein STM2215 (rtn) is needed during Salmonella infection and has cyclic di-GMP phosphodiesterase activity. Molecular microbiology\| PubMed ID: 23734719	2013
Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ⁵⁴ (RpoN) regulon of Salmonella Typhimurium LT2. BMC genomics\| PubMed ID: 24007446	2013
Expression of HER2 in Breast Cancer Promotes a Massive Reorganization of Gene Activity and Suggests a Role for Epigenetic Regulation. Journal of data mining in genomics & proteomics\| PubMed ID: 24009986	2012
Novel determinants of intestinal colonization of Salmonella enterica serotype typhimurium identified in bovine enteric infection. Infection and immunity\| PubMed ID: 24019407	2013
Probing the ArcA regulon under aerobic/ROS conditions in Salmonella enterica serovar Typhimurium. BMC genomics\| PubMed ID: 24044554	2013
The 4-cysteine zinc-finger motif of the RNA polymerase regulator DksA serves as a thiol switch for sensing oxidative and nitrosative stress. Molecular microbiology\| PubMed ID: 24354846	2014
Whole-Genome Sequencing of Salmonella enterica subsp. enterica Serovar Cubana Strains Isolated from Agricultural Sources. Genome announcements\| PubMed ID: 24459266	2014
Generation of "virtual" control groups for single arm prostate cancer adjuvant trials. PloS one\| PubMed ID: 24465467	2014
Integrative analysis of Salmonellosis in Israel reveals association of Salmonella enterica Serovar 9,12:l,v:- with extraintestinal infections, dissemination of endemic S. enterica Serovar Ty... Journal of clinical microbiology\| PubMed ID: 24719441	2014
Identification of a Salmonella ancillary copper detoxification mechanism by a comparative analysis of the genome-wide transcriptional response to copper and zinc excess. Microbiology (Reading, England)\| PubMed ID: 24858080	2014
The small RNA RyhB homologs from Salmonella typhimurium participate in the response to S-nitrosoglutathione-induced stress. Biochemical and biophysical research communications\| PubMed ID: 24937451	2014
Defined Single-Gene and Multi-Gene Deletion Mutant Collections in Salmonella enterica sv Typhimurium. PloS one\| PubMed ID: 25007190	2014
Role of the adjacent stroma cells in prostate cancer development and progression: synergy between TGF-β and IGF signaling. BioMed research international\| PubMed ID: 25089270	2014