Jian-Kang Zhu

Department of Horticulture and Landscape Architecture, Purdue University

Affiliated withPurdue University Chinese Academy of Sciences

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 9	2014

Other Publications

Article	Year
The protein kinase SOS2 activates the Arabidopsis H(+)/Ca(2+) antiporter CAX1 to integrate calcium transport and salt tolerance. The Journal of biological chemistry\| PubMed ID: 14583601	2004
Molecular genetic perspectives on cross-talk and specificity in abiotic stress signalling in plants. Journal of experimental botany\| PubMed ID: 14673035	2004
Transgenic evaluation of activated mutant alleles of SOS2 reveals a critical requirement for its kinase activity and C-terminal regulatory domain for salt tolerance in Arabidopsis thaliana. The Plant cell\| PubMed ID: 14742879	2004
PLANT CELLULAR AND MOLECULAR RESPONSES TO HIGH SALINITY. Annual review of plant physiology and plant molecular biology\| PubMed ID: 15012199	2000
The SOS3 family of calcium sensors and SOS2 family of protein kinases in Arabidopsis. Plant physiology\| PubMed ID: 15020756	2004
From laboratory to field. Using information from Arabidopsis to engineer salt, cold, and drought tolerance in crops. Plant physiology\| PubMed ID: 15173567	2004
An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 15205481	2004
A probable Na+(K+)/H+ exchanger on the chloroplast envelope functions in pH homeostasis and chloroplast development in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 15220473	2004
Salt cress. A halophyte and cryophyte Arabidopsis relative model system and its applicability to molecular genetic analyses of growth and development of extremophiles. Plant physiology\| PubMed ID: 15247369	2004
Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray. Plant physiology\| PubMed ID: 15247402	2004
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. The Plant cell\| PubMed ID: 15258262	2004
AtHKT1 facilitates Na+ homeostasis and K+ nutrition in planta. Plant physiology\| PubMed ID: 15347798	2004
A single amino acid substitution in the Arabidopsis FIERY1/HOS2 protein confers cold signaling specificity and lithium tolerance. The Plant journal : for cell and molecular biology\| PubMed ID: 15500469	2004
A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis. The Plant cell\| PubMed ID: 15598798	2005
The structure of the Arabidopsis thaliana SOS3: molecular mechanism of sensing calcium for salt stress response. Journal of molecular biology\| PubMed ID: 15644219	2005
Cloning and characterization of microRNAs from rice. The Plant cell\| PubMed ID: 15805478	2005
HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 15994234	2005
Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses. The Plant cell\| PubMed ID: 15994908	2005
Disruption of the cellulose synthase gene, AtCesA8/IRX1, enhances drought and osmotic stress tolerance in Arabidopsis. The Plant journal : for cell and molecular biology\| PubMed ID: 15998313	2005
Identification and characterization of endogenous small interfering RNAs from rice. Nucleic acids research\| PubMed ID: 16077027	2005
Preventing transcriptional gene silencing by active DNA demethylation. FEBS letters\| PubMed ID: 16162337	2005
The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. The Plant cell\| PubMed ID: 16214899	2005
Mutations in a conserved replication protein suppress transcriptional gene silencing in a DNA-methylation-independent manner in Arabidopsis. Current biology : CB\| PubMed ID: 16271867	2005
A miRNA involved in phosphate-starvation response in Arabidopsis. Current biology : CB\| PubMed ID: 16303564	2005
ROR1/RPA2A, a putative replication protein A2, functions in epigenetic gene silencing and in regulation of meristem development in Arabidopsis. The Plant cell\| PubMed ID: 16326925	2006
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell\| PubMed ID: 16377568	2005
Salt stress signaling and mechanisms of plant salt tolerance. Genetic engineering\| PubMed ID: 16382876	2006
Methods and concepts in quantifying resistance to drought, salt and freezing, abiotic stresses that affect plant water status. The Plant journal : for cell and molecular biology\| PubMed ID: 16441347	2006
Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice. The Plant journal : for cell and molecular biology\| PubMed ID: 16553892	2006
The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 16702557	2006
EMS mutagenesis of Arabidopsis. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 16739570	2006
STABILIZED1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover, and stress tolerance in Arabidopsis. The Plant cell\| PubMed ID: 16751345	2006
Nomenclature for HKT transporters, key determinants of plant salinity tolerance. Trends in plant science\| PubMed ID: 16809061	2006
Osmogenetics: Aristotle to Arabidopsis. The Plant cell\| PubMed ID: 16809814	2006
What makes species unique? The contribution of proteins with obscure features. Genome biology\| PubMed ID: 16859532	2006
Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. The Plant cell\| PubMed ID: 16861386	2006
Salt stress affects cortical microtubule organization and helical growth in Arabidopsis. Plant & cell physiology\| PubMed ID: 16861712	2006
Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 16864782	2006
Mutation of SAD2, an importin beta-domain protein in Arabidopsis, alters abscisic acid sensitivity. The Plant journal : for cell and molecular biology\| PubMed ID: 16889648	2006
Mutations in ABO1/ELO2, a subunit of holo-Elongator, increase abscisic acid sensitivity and drought tolerance in Arabidopsis thaliana. Molecular and cellular biology\| PubMed ID: 16943431	2006
A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. The Journal of biological chemistry\| PubMed ID: 17015446	2006
The plasma membrane Na+/H+ antiporter SOS1 interacts with RCD1 and functions in oxidative stress tolerance in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 17023541	2006
A putative Arabidopsis nucleoporin, AtNUP160, is critical for RNA export and required for plant tolerance to cold stress. Molecular and cellular biology\| PubMed ID: 17030626	2006
A pathogen-inducible endogenous siRNA in plant immunity. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 17071740	2006
The protein kinase TOUSLED is required for maintenance of transcriptional gene silencing in Arabidopsis. EMBO reports\| PubMed ID: 17110953	2007
Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress. FEBS letters\| PubMed ID: 17112521	2006
Cold transiently activates calcium-permeable channels in Arabidopsis mesophyll cells. Plant physiology\| PubMed ID: 17114272	2007
Conservation of the salt overly sensitive pathway in rice. Plant physiology\| PubMed ID: 17142477	2007
Recognition of a PP2C interaction motif in several plant protein kinases. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 17200569	2007
The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in Arabidopsis. Current biology : CB\| PubMed ID: 17208187	2007
Identification of two protein kinases required for abscisic acid regulation of seed germination, root growth, and gene expression in Arabidopsis. The Plant cell\| PubMed ID: 17307925	2007
Altered ABA, proline and hydrogen peroxide in an Arabidopsis glutamate:glyoxylate aminotransferase mutant. Plant molecular biology\| PubMed ID: 17318317	2007
Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. The EMBO journal\| PubMed ID: 17332757	2007
Interplay between cold-responsive gene regulation, metabolism and RNA processing during plant cold acclimation. Current opinion in plant biology\| PubMed ID: 17468037	2007
Arabidopsis protein kinase PKS5 inhibits the plasma membrane H+ -ATPase by preventing interaction with 14-3-3 protein. The Plant cell\| PubMed ID: 17483306	2007
An enhancer mutant of Arabidopsis salt overly sensitive 3 mediates both ion homeostasis and the oxidative stress response. Molecular and cellular biology\| PubMed ID: 17485445	2007
The structure of the C-terminal domain of the protein kinase AtSOS2 bound to the calcium sensor AtSOS3. Molecular cell\| PubMed ID: 17499048	2007
Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome biology\| PubMed ID: 17543110	2007
Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination. Nature\| PubMed ID: 17554311	2007
Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends in plant science\| PubMed ID: 17573231	2007
Interaction of SOS2 with nucleoside diphosphate kinase 2 and catalases reveals a point of connection between salt stress and H2O2 signaling in Arabidopsis thaliana. Molecular and cellular biology\| PubMed ID: 17785451	2007
Cold stress regulation of gene expression in plants. Trends in plant science\| PubMed ID: 17855156	2007
New developments in abscisic acid perception and metabolism. Current opinion in plant biology\| PubMed ID: 17875396	2007
SOS2 promotes salt tolerance in part by interacting with the vacuolar H+-ATPase and upregulating its transport activity. Molecular and cellular biology\| PubMed ID: 17875927	2007
Reactive oxygen species mediate Na+-induced SOS1 mRNA stability in Arabidopsis. The Plant journal : for cell and molecular biology\| PubMed ID: 17996020	2008
Distinctive core histone post-translational modification patterns in Arabidopsis thaliana. PloS one\| PubMed ID: 18030344	2007
Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis. BMC molecular biology\| PubMed ID: 18194570	2008
A probabilistic method for small RNA flowgram matching. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing\| PubMed ID: 18229677	2008
Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC plant biology\| PubMed ID: 18312648	2008
Annotating genes of known and unknown function by large-scale coexpression analysis. Plant physiology\| PubMed ID: 18354039	2008
Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 18356294	2008
Novel and nodulation-regulated microRNAs in soybean roots. BMC genomics\| PubMed ID: 18402695	2008
Activated expression of an Arabidopsis HD-START protein confers drought tolerance with improved root system and reduced stomatal density. The Plant cell\| PubMed ID: 18451323	2008
Epigenome sequencing comes of age. Cell\| PubMed ID: 18455978	2008
Identification of cold-inducible microRNAs in plants by transcriptome analysis. Biochimica et biophysica acta\| PubMed ID: 18471443	2008
Dolichol biosynthesis and its effects on the unfolded protein response and abiotic stress resistance in Arabidopsis. The Plant cell\| PubMed ID: 18612099	2008
Reconstituting plant miRNA biogenesis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 18632572	2008
SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to arabidopsis stomatal differentiation. The Plant cell\| PubMed ID: 18641265	2008
Functional gene-mining for salt-tolerance genes with the power of Arabidopsis. The Plant journal : for cell and molecular biology\| PubMed ID: 18643972	2008
The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. The Plant cell\| PubMed ID: 18682547	2008
ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis. Nature\| PubMed ID: 18815596	2008
Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa. Genome research\| PubMed ID: 18971307	2009
Abscisic acid-mediated epigenetic processes in plant development and stress responses. Journal of integrative plant biology\| PubMed ID: 19017106	2008
Criteria for annotation of plant MicroRNAs. The Plant cell\| PubMed ID: 19074682	2008
A rice kinase-protein interaction map. Plant physiology\| PubMed ID: 19109415	2009
Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Molecular cell\| PubMed ID: 19110459	2009
Epigenetic regulation of stress responses in plants. Current opinion in plant biology\| PubMed ID: 19179104	2009
NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation. Genes & development\| PubMed ID: 19204117	2009
SIK1/SOS2 networks: decoding sodium signals via calcium-responsive protein kinase pathways. Pflügers Archiv : European journal of physiology\| PubMed ID: 19247687	2009
Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana. BMC genomics\| PubMed ID: 19358740	2009
RNA-directed DNA methylation and demethylation in plants. Science in China. Series C, Life sciences / Chinese Academy of Sciences\| PubMed ID: 19381459	2009
Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science (New York, N.Y.)\| PubMed ID: 19407142	2009
An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein. Cell\| PubMed ID: 19410546	2009
Arabidopsis mutant deficient in 3 abscisic acid-activated protein kinases reveals critical roles in growth, reproduction, and stress. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 19420218	2009
An autophosphorylation site of the protein kinase SOS2 is important for salt tolerance in Arabidopsis. Molecular plant\| PubMed ID: 19529820	2009
Abiotic stress tolerance: from gene discovery in model organisms to crop improvement. Molecular plant\| PubMed ID: 19529825	2009
Overexpression of SOS (Salt Overly Sensitive) genes increases salt tolerance in transgenic Arabidopsis. Molecular plant\| PubMed ID: 19529826	2009
Disruption of Arabidopsis CHY1 reveals an important role of metabolic status in plant cold stress signaling. Molecular plant\| PubMed ID: 19529827	2009
Active DNA demethylation mediated by DNA glycosylases. Annual review of genetics\| PubMed ID: 19659441	2009
Protein-protein interactions of tandem affinity purified protein kinases from rice. PloS one\| PubMed ID: 19690613	2009
A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors. Nature\| PubMed ID: 19898420	2009
A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development. Genes & development\| PubMed ID: 19903758	2009
In vitro reconstitution of an abscisic acid signalling pathway. Nature\| PubMed ID: 19924127	2009
An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis. The Plant journal : for cell and molecular biology\| PubMed ID: 20059743	2010
Phenotypic analysis of Arabidopsis mutants: root elongation under salt/hormone-induced stress. Cold Spring Harbor protocols\| PubMed ID: 20150051	2009
Phenotypic analysis of Arabidopsis mutants: electrolyte leakage after freezing stress. Cold Spring Harbor protocols\| PubMed ID: 20150108	2010
RAS1, a quantitative trait locus for salt tolerance and ABA sensitivity in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 20212128	2010
Non-coding small RNAs responsive to abiotic stress in wheat (Triticum aestivum L.). Functional & integrative genomics\| PubMed ID: 20217168	2010
Phenotypic analysis of Arabidopsis mutants: germination rate under salt/hormone-induced stress. Cold Spring Harbor protocols\| PubMed ID: 20360355	2010
Gene regulation during cold stress acclimation in plants. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 20387039	2010
A cellulose synthase-like protein is required for osmotic stress tolerance in Arabidopsis. The Plant journal : for cell and molecular biology\| PubMed ID: 20409003	2010
A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis. Current biology : CB\| PubMed ID: 20409711	2010
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation. Nature\| PubMed ID: 20410883	2010
A viral suppressor protein inhibits host RNA silencing by hooking up with Argonautes. Genes & development\| PubMed ID: 20439425	2010
ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis. The Plant journal : for cell and molecular biology\| PubMed ID: 20487379	2010
An ABA-mimicking ligand that reduces water loss and promotes drought resistance in plants. Cell research\| PubMed ID: 23835477	2013
ABA receptors: the START of a new paradigm in phytohormone signalling. Journal of experimental botany\| PubMed ID: 20522527	2010
How many ways are there to generate small RNAs? Molecular cell\| PubMed ID: 20620948	2010
Retraction for Zhu et al., HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 20622156	2010
DNA replication factor C1 mediates genomic stability and transcriptional gene silencing in Arabidopsis. The Plant cell\| PubMed ID: 20639449	2010
Identification and mechanism of ABA receptor antagonism. Nature structural & molecular biology\| PubMed ID: 20729862	2010
Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis. Plant physiology\| PubMed ID: 20833729	2010
Arabidopsis decuple mutant reveals the importance of SnRK2 kinases in osmotic stress responses in vivo. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 21220313	2011
Activation of the plasma membrane Na/H antiporter Salt-Overly-Sensitive 1 (SOS1) by phosphorylation of an auto-inhibitory C-terminal domain. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 21262798	2011
De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 21262818	2011
Regulation and function of DNA methylation in plants and animals. Cell research\| PubMed ID: 21321601	2011
Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis. The New phytologist\| PubMed ID: 21348874	2011
RNA-directed DNA methylation. Current opinion in plant biology\| PubMed ID: 21420348	2011
Epigenetics of the epigenome. Current opinion in plant biology\| PubMed ID: 21489862	2011
Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochimica et biophysica acta\| PubMed ID: 21605713	2012
The plant cuticle is required for osmotic stress regulation of abscisic acid biosynthesis and osmotic stress tolerance in Arabidopsis. The Plant cell\| PubMed ID: 21610183	2011
Regenerant Arabidopsis lineages display a distinct genome-wide spectrum of mutations conferring variant phenotypes. Current biology : CB\| PubMed ID: 21802297	2011
The genome of the extremophile crucifer Thellungiella parvula. Nature genetics\| PubMed ID: 21822265	2011
Active DNA demethylation by oxidation and repair. Cell research\| PubMed ID: 21862972	2011
A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 21896764	2011
Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes. BMC plant biology\| PubMed ID: 21923928	2011
The structure of Arabidopsis thaliana OST1 provides insights into the kinase regulation mechanism in response to osmotic stress. Journal of molecular biology\| PubMed ID: 21983340	2011
An atypical component of RNA-directed DNA methylation machinery has both DNA methylation-dependent and -independent roles in locus-specific transcriptional gene silencing. Cell research\| PubMed ID: 22064704	2011
Molecular mimicry regulates ABA signaling by SnRK2 kinases and PP2C phosphatases. Science (New York, N.Y.)\| PubMed ID: 22116026	2012
Structural basis for basal activity and autoactivation of abscisic acid (ABA) signaling SnRK2 kinases. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22160701	2011
Targeted transcriptional repression using a chimeric TALE-SRDX repressor protein. Plant molecular biology\| PubMed ID: 22167390	2012
Structural basis for sequence-specific recognition of DNA by TAL effectors. Science (New York, N.Y.)\| PubMed ID: 22223738	2012
ROP11 GTPase negatively regulates ABA signaling by protecting ABI1 phosphatase activity from inhibition by the ABA receptor RCAR1/PYL9 in Arabidopsis. Journal of integrative plant biology\| PubMed ID: 22251383	2012
Rapid and highly efficient construction of TALE-based transcriptional regulators and nucleases for genome modification. Plant molecular biology\| PubMed ID: 22271303	2012
A DNA 3' phosphatase functions in active DNA demethylation in Arabidopsis. Molecular cell\| PubMed ID: 22325353	2012
Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function. Genome biology\| PubMed ID: 22439910	2012
Sulfamethazine suppresses epigenetic silencing in Arabidopsis by impairing folate synthesis. The Plant cell\| PubMed ID: 22447685	2012
Arabidopsis serine decarboxylase mutants implicate the roles of ethanolamine in plant growth and development. International journal of molecular sciences\| PubMed ID: 22489147	2012
Catalytic mechanism and kinase interactions of ABA-signaling PP2C phosphatases. Plant signaling & behavior\| PubMed ID: 22516825	2012
A histone acetyltransferase regulates active DNA demethylation in Arabidopsis. Science (New York, N.Y.)\| PubMed ID: 22700931	2012
Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22733760	2012
Insights into salt tolerance from the genome of Thellungiella salsuginea. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22778405	2012
Osmotic stress signaling via protein kinases. Cellular and molecular life sciences : CMLS\| PubMed ID: 22828864	2012
Asg1 is a stress-inducible gene which increases stomatal resistance in salt stressed potato. Journal of plant physiology\| PubMed ID: 22854180	2012
High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice. BMC plant biology\| PubMed ID: 22862743	2012
Seeing the forest for the trees: a wide perspective on RNA-directed DNA methylation. Genes & development\| PubMed ID: 22895250	2012
Loss of membranous carcinoembryonic antigen-related cell adhesion molecule 1 expression is related to decreased relapse-free survival of hepatocellular carcinoma following liver transplantat... Chinese medical journal\| PubMed ID: 22932077	2012
Recognition of methylated DNA by TAL effectors. Cell research\| PubMed ID: 22945353	2012
Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23071326	2012
STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis. Nucleic acids research\| PubMed ID: 23268445	2013
Characterization and DNA-binding specificities of Ralstonia TAL-like effectors. Molecular plant\| PubMed ID: 23300258	2013
Rapid phosphatidic acid accumulation in response to low temperature stress in Arabidopsis is generated through diacylglycerol kinase. Frontiers in plant science\| PubMed ID: 23346092	2013
Aequorin-based luminescence imaging reveals stimulus- and tissue-specific Ca2+ dynamics in Arabidopsis plants. Molecular plant\| PubMed ID: 23371933	2013
Mechanisms of small RNA generation from cis-NATs in response to environmental and developmental cues. Molecular plant\| PubMed ID: 23505223	2013
Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening. Physiologia plantarum\| PubMed ID: 23517122	2013
The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis. The EMBO journal\| PubMed ID: 23524848	2013
DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23637343	2013
Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC). Molecular & cellular proteomics : MCP\| PubMed ID: 23660473	2013
Double repression in jasmonate-mediated plant defense. Molecular cell\| PubMed ID: 23706816	2013
Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23776212	2013
Chemical probes in plant epigenetics studies. Plant signaling & behavior\| PubMed ID: 23838953	2013
The PRP6-like splicing factor STA1 is involved in RNA-directed DNA methylation by facilitating the production of Pol V-dependent scaffold RNAs. Nucleic acids research\| PubMed ID: 23877244	2013
Folate polyglutamylation is involved in chromatin silencing by maintaining global DNA methylation and histone H3K9 dimethylation in Arabidopsis. The Plant cell\| PubMed ID: 23881414	2013
Transcriptomic and physiological variations of three Arabidopsis ecotypes in response to salt stress. PloS one\| PubMed ID: 23894403	2013
Interactions between soybean ABA receptors and type 2C protein phosphatases. Plant molecular biology\| PubMed ID: 23934343	2013
Efficient genome editing in plants using a CRISPR/Cas system. Cell research\| PubMed ID: 23958582	2013
Application of the CRISPR-Cas system for efficient genome engineering in plants. Molecular plant\| PubMed ID: 23963532	2013
RNA-binding protein regulates plant DNA methylation by controlling mRNA processing at the intronic heterochromatin-containing gene IBM1. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24003136	2013
Structure of a PLS-class pentatricopeptide repeat protein provides insights into mechanism of RNA recognition. The Journal of biological chemistry\| PubMed ID: 24047899	2013
Using Arabidopsis-related model species (ARMS): growth, genetic transformation, and comparative genomics. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 24057359	2014
A Pre-mRNA-splicing factor is required for RNA-directed DNA methylation in Arabidopsis. PLoS genetics\| PubMed ID: 24068953	2013
Structural basis for the modular recognition of single-stranded RNA by PPR proteins. Nature\| PubMed ID: 24162847	2013
Structural basis for RNA recognition by a dimeric PPR-protein complex. Nature structural & molecular biology\| PubMed ID: 24186060	2013
The unique mode of action of a divergent member of the ABA-receptor protein family in ABA and stress signaling. Cell research\| PubMed ID: 24189045	2013
Arabidopsis EDM2 promotes IBM1 distal polyadenylation and regulates genome DNA methylation patterns. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24248388	2014
Sulfate availability affects ABA levels and germination response to ABA and salt stress in Arabidopsis thaliana. The Plant journal : for cell and molecular biology\| PubMed ID: 24330104	2014
Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24550464	2014
The Arabidopsis STRESS RESPONSE SUPPRESSOR DEAD-box RNA helicases are nucleolar- and chromocenter-localized proteins that undergo stress-mediated relocalization and are involved in epigeneti... The Plant journal : for cell and molecular biology\| PubMed ID: 24724701	2014
An Rrp6-like protein positively regulates noncoding RNA levels and DNA methylation in Arabidopsis. Molecular cell\| PubMed ID: 24726328	2014
RNA Splicing Factors and RNA-Directed DNA Methylation. Biology\| PubMed ID: 24833507	2014
The CRISPR/Cas9 system produces specific and homozygous targeted gene editing in rice in one generation. Plant biotechnology journal\| PubMed ID: 24854982	2014
Transcription of nuclear organellar DNA in a model plant system. Genome biology and evolution\| PubMed ID: 24868015	2014
Constitutive production of nitric oxide leads to enhanced drought stress resistance and extensive transcriptional reprogramming in Arabidopsis. Journal of experimental botany\| PubMed ID: 24868034	2014
The ABA receptor PYL8 promotes lateral root growth by enhancing MYB77-dependent transcription of auxin-responsive genes. Science signaling\| PubMed ID: 24894996	2014
Overproduction of stomatal lineage cells in Arabidopsis mutants defective in active DNA demethylation. Nature communications\| PubMed ID: 24898766	2014
Protocol: a beginner's guide to the analysis of RNA-directed DNA methylation in plants. Plant methods\| PubMed ID: 24955108	2014
Regulation of Active DNA Demethylation by an α-Crystallin Domain Protein in Arabidopsis. Molecular cell\| PubMed ID: 25002145	2014
RNA-directed DNA methylation in plants: Where to start? RNA biology\| PubMed ID: 25003825	2013
Identification of ERK1 Direct Substrates using Stable Isotope Labeled Kinase Assay-Linked Phosphoproteomics. Molecular & cellular proteomics : MCP\| PubMed ID: 25022875	2014
Emerging roles of RNA processing factors in regulating long non-coding RNAs. RNA biology\| PubMed ID: 25144332	2014