Raz Zarivach

Department of Life Sciences and National Institute for Biotechnology in the Negev, Ben-Gurion University

Affiliated withBen-Gurion University Ben-Gurion University of the Negev National Institute for Biotechnology in the Negev (NIBN)

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JoVE Journal Publications

ArticleTotal : 3	Year
Publication title Cited by 6	2010
Publication title Cited by 3	2018
Publication title Cited by 1	2023

Other Publications

Article	Year
Characterization of Escherichia coli null mutants for glutaredoxin 2. The Journal of biological chemistry\| PubMed ID: 11741965	2002
Protein structure: experimental and theoretical aspects. FEBS letters\| PubMed ID: 12163185	2002
The RNA helicase DbpA exhibits a markedly different conformation in the ADP-bound state when compared with the ATP- or RNA-bound states. The Journal of biological chemistry\| PubMed ID: 12324462	2002
Initiation and inhibition of protein biosynthesis studies at high resolution. Current protein & peptide science\| PubMed ID: 12370011	2002
On the interaction of colicin E3 with the ribosome. Biochimie\| PubMed ID: 12423788	2002
Antibiotics targeting ribosomes: crystallographic studies. Current drug targets. Infectious disorders\| PubMed ID: 12462147	2002
Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression. Molecular cell\| PubMed ID: 12535524	2003
The conserved Glu-60 residue in Thermoanaerobacter brockii alcohol dehydrogenase is not essential for catalysis. Protein science : a publication of the Protein Society\| PubMed ID: 12592017	2003
Structural basis for the antibiotic activity of ketolides and azalides. Structure (London, England : 1993)\| PubMed ID: 12623020	2003
Prediction of the structure of the complex between the 30S ribosomal subunit and colicin E3 via weighted-geometric docking. Journal of biomolecular structure & dynamics\| PubMed ID: 12643769	2003
Genetic analysis of familial colorectal cancer in Israeli Arabs. Human mutation\| PubMed ID: 12655564	2003
On peptide bond formation, translocation, nascent protein progression and the regulatory properties of ribosomes. Derived on 20 October 2002 at the 28th FEBS Meeting in Istanbul. European journal of biochemistry / FEBS\| PubMed ID: 12787020	2003
Structural insight into the antibiotic action of telithromycin against resistant mutants. Journal of bacteriology\| PubMed ID: 12837804	2003
Ribosomal crystallography: peptide bond formation and its inhibition. Biopolymers\| PubMed ID: 12925991	2003
Ribosomal crystallography: a flexible nucleotide anchoring tRNA translocation, facilitates peptide-bond formation, chirality discrimination and antibiotics synergism. FEBS letters\| PubMed ID: 15165888	2004
23S rRNA base pair 2057-2611 determines ketolide susceptibility and fitness cost of the macrolide resistance mutation 2058A-->G. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 15795375	2005
Reproducible growth of well diffracting ribosomal crystals. Acta crystallographica. Section D, Biological crystallography\| PubMed ID: 15930627	2005
Early encounters of a nascent membrane protein: specificity and timing of contacts inside and outside the ribosome. The Journal of cell biology\| PubMed ID: 15983062	2005
Symmetry at the active site of the ribosome: structural and functional implications. Biological chemistry\| PubMed ID: 16164408	2005
Structural analysis of a prototypical ATPase from the type III secretion system. Nature structural & molecular biology\| PubMed ID: 17237797	2007
Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS. Nature\| PubMed ID: 18451864	2008
Crystal structure of the talin integrin binding domain 2. Journal of molecular biology\| PubMed ID: 19340939	2009
Crystallization and preliminary crystallographic analysis of the Magnetospirillum magneticum AMB-1 and M. gryphiswaldense MSR-1 magnetosome-associated proteins MamA. Acta crystallographica. Section F, Structural biology and crystallization communications\| PubMed ID: 20606283	2010
Metalloprotease type III effectors that specifically cleave JNK and NF-ÎºB. The EMBO journal\| PubMed ID: 21113130	2011
Self-recognition mechanism of MamA, a magnetosome-associated TPR-containing protein, promotes complex assembly. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 21784982	2011
The cation diffusion facilitator proteins MamB and MamM of Magnetospirillum gryphiswaldense have distinct and complex functions, and are involved in magnetite biomineralization and magnetoso... Molecular microbiology\| PubMed ID: 22007638	2011
The molecular basis for the broad substrate specificity of human sulfotransferase 1A1. PloS one\| PubMed ID: 22069470	2011
Structural and functional discussion of the tetra-trico-peptide repeat, a protein interaction module. Structure (London, England : 1993)\| PubMed ID: 22404999	2012
Association of the chromosome replication initiator DnaA with the Escherichia coli inner membrane in vivo: quantity and mode of binding. PloS one\| PubMed ID: 22574163	2012
Crystallization and preliminary crystallographic analysis of the C-terminal domain of MamM, a magnetosome-associated protein from Magnetospirillum gryphiswaldense MSR-1. Acta crystallographica. Section F, Structural biology and crystallization communications\| PubMed ID: 22869124	2012
Inter-phylum structural conservation of the magnetosome-associated TPR-containing protein, MamA. Journal of structural biology\| PubMed ID: 22917855	2012
Characterization of the N-terminal domain of BteA: a Bordetella type III secreted cytotoxic effector. PloS one\| PubMed ID: 23383256	2013
RNA-DNA differences in human mitochondria restore ancestral form of 16S ribosomal RNA. Genome research\| PubMed ID: 23913925	2013
A high-resolution structure that provides insight into coiled-coil thiodepsipeptide dynamic chemistry. Angewandte Chemie (International ed. in English)\| PubMed ID: 23929823	2013
Aerobic iron-based cross-dehydrogenative coupling enables efficient diversity-oriented synthesis of coumestrol-based selective estrogen receptor modulators. Chemistry (Weinheim an der Bergstrasse, Germany)\| PubMed ID: 23946113	2013
BtcA, A class IA type III chaperone, interacts with the BteA N-terminal domain through a globular/non-globular mechanism. PloS one\| PubMed ID: 24312558	2013
Structure prediction of magnetosome-associated proteins. Frontiers in microbiology\| PubMed ID: 24523717	2014
Cation diffusion facilitators transport initiation and regulation is mediated by cation induced conformational changes of the cytoplasmic domain. PloS one\| PubMed ID: 24658343	2014
Bacterial magnetosome biomineralization--a novel platform to study molecular mechanisms of human CDF-related Type-II diabetes. PloS one\| PubMed ID: 24819161	2014
ZnT-1 extrudes zinc from mammalian cells functioning as a Zn(2+)/H(+) exchanger. Metallomics : integrated biometal science\| PubMed ID: 24951051	2014
Crystal structure of the magnetobacterial protein MtxA C-terminal domain reveals a new sequence-structure relationship. Frontiers in molecular biosciences\| PubMed ID: 26052516	2015
MamA as a Model Protein for Structure-Based Insight into the Evolutionary Origins of Magnetotactic Bacteria. PloS one\| PubMed ID: 26114501	2015
From invagination to navigation: The story of magnetosome-associated proteins in magnetotactic bacteria. Protein science : a publication of the Protein Society\| PubMed ID: 26457474	2016
Mitochondrial Involvement in Vertebrate Speciation? The Case of Mito-nuclear Genetic Divergence in Chameleons. Genome biology and evolution\| PubMed ID: 26590214	2015
Structure-function studies of the magnetite-biomineralizing magnetosome-associated protein MamC. Journal of structural biology\| PubMed ID: 26970040	2016
Engineering of Methylation State Specific 3xMBT Domain Using ELISA Screening. PloS one\| PubMed ID: 27111853	2016
Genetic manipulation of iron biomineralization enhances MR relaxivity in a ferritin-M6A chimeric complex. Scientific reports\| PubMed ID: 27211820	2016
Structural Basis for p53 Lys120-Acetylation-Dependent DNA-Binding Mode. Journal of molecular biology\| PubMed ID: 27338200	2016
Ribosomal Antibiotics: Contemporary Challenges. Antibiotics (Basel, Switzerland)\| PubMed ID: 27367739	2016
An Extended Loop of the Pup Ligase, PafA, Mediates Interaction with Protein Targets. Journal of molecular biology\| PubMed ID: 27497689	2016
Disease-Homologous Mutation in the Cation Diffusion Facilitator Protein MamM Causes Single-Domain Structural Loss and Signifies Its Importance. Scientific reports\| PubMed ID: 27550551	2016
Mitochondrial 16S rRNA Is Methylated by tRNA Methyltransferase TRMT61B in All Vertebrates. PLoS biology\| PubMed ID: 27631568	2016
A Look into the Biochemistry of Magnetosome Biosynthesis in Magnetotactic Bacteria. ACS chemical biology\| PubMed ID: 27930882	2017
Zinc transport and the inhibition of the L-type calcium channel are two separable functions of ZnT-1. Metallomics : integrated biometal science\| PubMed ID: 28091657	2017
SLC30A9 mutation affecting intracellular zinc homeostasis causes a novel cerebro-renal syndrome. Brain : a journal of neurology\| PubMed ID: 28334855	2017
Highly Efficient Flavin-Adenine Dinucleotide Glucose Dehydrogenase Fused to a Minimal Cytochrome C Domain. Journal of the American Chemical Society\| PubMed ID: 28915057	2017
A quantitative assessment of the membrane-integral sub-proteome of a bacterial magnetic organelle. Journal of proteomics\| PubMed ID: 29054541	2018
Transition metal binding selectivity in proteins and its correlation with the phylogenomic classification of the cation diffusion facilitator protein family. Scientific reports\| PubMed ID: 29180655	2017
The dual role of MamB in magnetosome membrane assembly and magnetite biomineralization. Molecular microbiology\| PubMed ID: 29243866	2018
The importance of the helical structure of a MamC-derived magnetite-interacting peptide for its function in magnetite formation. Acta crystallographica. Section D, Structural biology\| PubMed ID: 29372895	2018
Human CCL5 trimer: expression, purification and initial crystallographic studies. Acta crystallographica. Section F, Structural biology communications\| PubMed ID: 29400316	2018
CPAP3 proteins in the mineralized cuticle of a decapod crustacean. Scientific reports\| PubMed ID: 29403068	2018
Directed evolution of SIRT6 for improved deacylation and glucose homeostasis maintenance. Scientific reports\| PubMed ID: 29476161	2018
The 3-D structure of VNG0258H/RosR - A haloarchaeal DNA-binding protein in its ionic shell. Journal of structural biology\| PubMed ID: 30110657	2018
The FtsZ-like protein FtsZm of Magnetospirillum gryphiswaldense likely interacts with its generic homolog and is required for biomineralization under nitrate deprivation. Journal of bacteriology\| PubMed ID: 24272781	2014
Understanding the Biomineralization Role of Magnetite-Interacting Components (MICs) From Magnetotactic Bacteria. Frontiers in microbiology\| PubMed ID: 30405554	2018
Molecular cross-talk in a unique parasitoid manipulation strategy. Insect biochemistry and molecular biology\| PubMed ID: 30508629	2019
CAP2 mutation leads to impaired actin dynamics and associates with supraventricular tachycardia and dilated cardiomyopathy. Journal of medical genetics\| PubMed ID: 30518548	2019
Zinc transporter 10 (ZnT10)-dependent extrusion of cellular Mn is driven by an active Ca-coupled exchange. The Journal of biological chemistry\| PubMed ID: 30755481	2019
Metal binding to the dynamic cytoplasmic domain of the cation diffusion facilitator (CDF) protein MamM induces a 'locked-in' configuration. The FEBS journal\| PubMed ID: 30811856	2019
The plus-tip tracking and microtubule stabilizing activities of Javelin-like regulate microtubule organization and cell polarity. The FEBS journal\| PubMed ID: 31152621	2019
A novel endogenous selection marker for the diatom Phaeodactylum tricornutum based on a unique mutation in phytoene desaturase 1. Scientific reports\| PubMed ID: 31160749	2019
Unexpected implications of STAT3 acetylation revealed by genetic encoding of acetyl-lysine. Biochimica et biophysica acta. General subjects\| PubMed ID: 31170499	2019
Specificity of protein-DNA interactions in hypersaline environment: structural studies on complexes of Halobacterium salinarum oxidative stress-dependent protein hsRosR. Nucleic acids research\| PubMed ID: 31310308	2019
Structure and membrane-targeting of a Bordetella pertussis effector N-terminal domain. Biochimica et biophysica acta. Biomembranes\| PubMed ID: 31487494	2019
The interdimeric interface controls function and stability of Ureaplasma urealiticum methionine S-adenosyltransferase. Journal of molecular biology\| PubMed ID: 31520601	2019
Hyperuricemia and gout caused by missense mutation in d-lactate dehydrogenase. The Journal of clinical investigation\| PubMed ID: 31638601	2019
The Role of the Small Export Apparatus Protein, SctS, in the Activity of the Type III Secretion System. Frontiers in microbiology\| PubMed ID: 31798543	2019
Integrative Model to Coordinate the Oligomerization and Aggregation Mechanisms of CCL5. Journal of molecular biology\| PubMed ID: 31931012	2020
From conservation to structure, studies of magnetosome associated cation diffusion facilitators (CDF) proteins in Proteobacteria. PloS one\| PubMed ID: 32310978	2020
A common genetic variant in zinc transporter ZnT2 (Thr288Ser) is present in women with low milk volume and alters lysosome function and cell energetics. American journal of physiology. Cell physiology\| PubMed ID: 32320289	2020
A gain of function mutation in SlNRC4a enhances basal immunity resulting in broad-spectrum disease resistance. Communications biology\| PubMed ID: 32732974	2020
The metal binding site composition of the cation diffusion facilitator protein MamM cytoplasmic domain impacts its metal responsivity. Scientific reports\| PubMed ID: 32820200	2020
The cation diffusion facilitator protein MamM's cytoplasmic domain exhibits metal-type dependent binding modes and discriminates against Mn. The Journal of biological chemistry\| PubMed ID: 32967967	2020
Folding of an Intrinsically Disordered Iron-Binding Peptide in Response to Sedimentation Revealed by Cryo-EM. Journal of the American Chemical Society\| PubMed ID: 33166133	2020
Aldosterone synthase (CYP11B2) deficiency among Palestinian infants: Three novel variants and genetic heterogeneity. American journal of medical genetics. Part A\| PubMed ID: 33438832	2021
Distinct features of the Leishmania cap-binding protein LeishIF4E2 revealed by CRISPR-Cas9 mediated hemizygous deletion. PLoS neglected tropical diseases\| PubMed ID: 33760809	2021
Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. The EMBO journal\| PubMed ID: 34156108	2021
Flexible microtubule anchoring modulates the bi-directional motility of the kinesin-5 Cin8. Cellular and molecular life sciences : CMLS\| PubMed ID: 34274977	2021
SAMase of Bacteriophage T3 Inactivates Escherichia coli's Methionine -Adenosyltransferase by Forming Heteropolymers. mBio\| PubMed ID: 34340545	2021
Metal transport mechanism of the cation diffusion facilitator (CDF) protein family - a structural perspective on human CDF (ZnT)-related diseases. RSC chemical biology\| PubMed ID: 34458794	2021
Distinct Regions of the Haloferax volcanii Dolichol Phosphate-Mannose Synthase AglD Mediate the Assembly and Subsequent Processing of the Lipid-Linked Mannose. Journal of bacteriology\| PubMed ID: 34633871	2022
Current view of iron biomineralization in magnetotactic bacteria. Journal of structural biology: X\| PubMed ID: 34723168	2021
Magnetite-binding proteins from the magnetotactic bacterium BW-1. Nanoscale\| PubMed ID: 34860229	2021
Loss-of-function mutants are associated with gut dysbiosis and alterations in intestinal gene expression in preterm infants. Gut microbes\| PubMed ID: 34965180	2022
Revisiting the Role of -Tubulin in Development: is not an Essential Gene, and its Novel Allele has a Tissue-Specific Dominant-Negative Impact. Frontiers in cell and developmental biology\| PubMed ID: 35111755	2021
Evolution of homo-oligomerization of methionine S-adenosyltransferases is replete with structure-function constrains. Protein science : a publication of the Protein Society\| PubMed ID: 35762725	2022
PSMC1 variant causes a novel neurological syndrome. Clinical genetics\| PubMed ID: 35861243	2022
High-Resolution Cryo-Electron Microscopy Reveals the Unique Striated Hollow Structure of Photocatalytic Macrocyclic Polydiacetylene Nanotubes. Journal of the American Chemical Society\| PubMed ID: 36126329	2022
Asgard ESCRT-III and VPS4 reveal conserved chromatin binding properties of the ESCRT machinery. The ISME journal\| PubMed ID: 36221007	2023
A Missense Variation in Associates with Impaired Actin Dynamics, Dilated Cardiomyopathy, and Left Ventricular Non-Compaction in Humans. International journal of molecular sciences\| PubMed ID: 36674904	2023
Limb girdle muscular disease caused by mutation and statin myopathy treatable with mevalonolactone. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 36745799	2023
Novel Susceptibility Genes Drive Familial Non-Medullary Thyroid Cancer in a Large Consanguineous Kindred. International journal of molecular sciences\| PubMed ID: 37175943	2023