Yan Wei Lim

Department of Biology, San Diego State University

Affiliated withSan Diego State University

Research Area

Biology Environment

Biography

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 30	2014
Publication title Cited by 33	2014

Other Publications

Article	Year
Spatial distribution of microbial communities in the cystic fibrosis lung. The ISME journal\| PubMed ID: 21796216	2012
Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung. American journal of respiratory cell and molecular biology\| PubMed ID: 21980056	2012
Metagenomic analysis of viruses in reclaimed water. Environmental microbiology\| PubMed ID: 19555373	2009
TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets. BMC bioinformatics\| PubMed ID: 20573248	2010
Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes. PloS one\| PubMed ID: 21674005	2011
Identification and removal of ribosomal RNA sequences from metatranscriptomes. Bioinformatics (Oxford, England)\| PubMed ID: 22155869	2012
Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities. Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society\| PubMed ID: 22951208	2013
Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness. PloS one\| PubMed ID: 23554892	2013
Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data. PloS one\| PubMed ID: 23737977	2013
Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation. The ISME journal\| PubMed ID: 24401860	2014
Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis. Journal of clinical microbiology\| PubMed ID: 24478471	2014
Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung. mBio\| PubMed ID: 24643867	2014
The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography. American journal of respiratory and critical care medicine\| PubMed ID: 24702670	2014
Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24982156	2014
Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition. PeerJ\| PubMed ID: 25177534	2014
Species-specific viromes in the ancestral holobiont hydra. PloS one\| PubMed ID: 25343582	2014
A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation. The ISME journal\| PubMed ID: 25514533	2014