Andreas Gnirke

Broad Institute of Harvard and Massachusetts Institute of Technology

Affiliated withBroad Institute of Harvard and Massachusetts Institute of Technology

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 504	2010

Other Publications

Article	Year
Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome. Genome biology\| PubMed ID: 12537575	2002
DNA sequence and analysis of human chromosome 18. Nature\| PubMed ID: 16177791	2005
Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis. Nucleic acids research\| PubMed ID: 16224102	2005
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature\| PubMed ID: 17080091	2006
Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 17442748	2007
The genome of the model beetle and pest Tribolium castaneum. Nature\| PubMed ID: 18362917	2008
Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature\| PubMed ID: 18600261	2008
The maternal-effect, selfish genetic element Medea is associated with a composite Tc1 transposon. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 18621706	2008
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nature biotechnology\| PubMed ID: 19182786	2009
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 19208812	2009
High-throughput bisulfite sequencing in mammalian genomes. Methods (San Diego, Calif.)\| PubMed ID: 19442738	2009
ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads. Genome biology\| PubMed ID: 19796385	2009
Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science (New York, N.Y.)\| PubMed ID: 19815776	2009
Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts. Genome biology\| PubMed ID: 19835606	2009
ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth. PLoS biology\| PubMed ID: 20016685	2009
Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution. Nature methods\| PubMed ID: 20062050	2010
Integrative analysis of the melanoma transcriptome. Genome research\| PubMed ID: 20179022	2010
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nature biotechnology\| PubMed ID: 20436462	2010
Targeted exon sequencing by in-solution hybrid selection. Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.]\| PubMed ID: 20582916	2010
Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nature methods\| PubMed ID: 20711195	2010
Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species. Genome biology\| PubMed ID: 20796282	2010
Quantitative comparison of genome-wide DNA methylation mapping technologies. Nature biotechnology\| PubMed ID: 20852634	2010
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nature biotechnology\| PubMed ID: 20852635	2010
High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 21187386	2011
Reprogramming factor expression initiates widespread targeted chromatin remodeling. Cell stem cell\| PubMed ID: 21211784	2011
Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines. Cell\| PubMed ID: 21295703	2011
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome biology\| PubMed ID: 21338519	2011
Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling. Nature protocols\| PubMed ID: 21412275	2011
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells. Nature biotechnology\| PubMed ID: 21516085	2011
Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature biotechnology\| PubMed ID: 21572440	2011
Hybrid selection for sequencing pathogen genomes from clinical samples. Genome biology\| PubMed ID: 21835008	2011
Genomic distribution and inter-sample variation of non-CpG methylation across human cell types. PLoS genetics\| PubMed ID: 22174693	2011