Amanda B. Hummon

Department of Chemistry and Biochemistry, University of Notre Dame

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 49	2014

Other Publications

Article	Year
A novel prohormone processing site in Aplysia californica: the Leu-Leu rule. Journal of neurochemistry\| PubMed ID: 12354287	2002
From precursor to final peptides: a statistical sequence-based approach to predicting prohormone processing. Journal of proteome research\| PubMed ID: 14692459	2003
Characterization of Aplysia enticin and temptin, two novel water-borne protein pheromones that act in concert with attractin to stimulate mate attraction. The Journal of biological chemistry\| PubMed ID: 15054104	2004
The chemistry of thought: neurotransmitters in the brain. Analytical chemistry\| PubMed ID: 15101371	2004
Discovering new invertebrate neuropeptides using mass spectrometry. Mass spectrometry reviews\| PubMed ID: 15937922	2006
Bridging neuropeptidomics and genomics with bioinformatics: Prediction of mammalian neuropeptide prohormone processing. Journal of proteome research\| PubMed ID: 16674105	2006
From the genome to the proteome: uncovering peptides in the Apis brain. Science (New York, N.Y.)\| PubMed ID: 17068263	2006
Gene expression profiling reveals a massive, aneuploidy-dependent transcriptional deregulation and distinct differences between lymph node-negative and lymph node-positive colon carcinomas. Cancer research\| PubMed ID: 17210682	2007
Isolation and solubilization of proteins after TRIzol extraction of RNA and DNA from patient material following prolonged storage. BioTechniques\| PubMed ID: 17489233	2007
Chromosomal breakpoints in primary colon cancer cluster at sites of structural variants in the genome. Cancer research\| PubMed ID: 18316590	2008
Integrative genomics reveals mechanisms of copy number alterations responsible for transcriptional deregulation in colorectal cancer. Genes, chromosomes & cancer\| PubMed ID: 19691111	2009
A genomic strategy for the functional validation of colorectal cancer genes identifies potential therapeutic targets. International journal of cancer. Journal international du cancer\| PubMed ID: 20473941	2011
Right-side and left-side colon cancer follow different pathways to relapse. Molecular carcinogenesis\| PubMed ID: 21656576	2012
Imaging mass spectrometry of three-dimensional cell culture systems. Analytical chemistry\| PubMed ID: 21992577	2011
Systems-wide RNAi analysis of CASP8AP2/FLASH shows transcriptional deregulation of the replication-dependent histone genes and extensive effects on the transcriptome of colorectal cancer cel... Molecular cancer\| PubMed ID: 22216762	2012
Comparative label-free LC-MS/MS analysis of colorectal adenocarcinoma and metastatic cells treated with 5-fluorouracil. Proteomics\| PubMed ID: 22623418	2012
Effects of the miR-143/-145 microRNA cluster on the colon cancer proteome and transcriptome. Journal of proteome research\| PubMed ID: 22897626	2012
Genetic amplification of the NOTCH modulator LNX2 upregulates the WNT/β-catenin pathway in colorectal cancer. Cancer research\| PubMed ID: 23319804	2013
Imaging mass spectrometry: from tissue sections to cell cultures. Advanced drug delivery reviews\| PubMed ID: 23571020	2013
Aneuploidy, oncogene amplification and epithelial to mesenchymal transition define spontaneous transformation of murine epithelial cells. Carcinogenesis\| PubMed ID: 23619298	2013
Evaluation of therapeutics in three-dimensional cell culture systems by MALDI imaging mass spectrometry. Analytical chemistry\| PubMed ID: 23724927	2013
Combination of multistep IMAC enrichment with high-pH reverse phase separation for in-depth phosphoproteomic profiling. Journal of proteome research\| PubMed ID: 23927012	2013
Single cell metabolic profiling of tumor mimics. Analytical chemistry\| PubMed ID: 24011091	2013
Comparative LC-MS/MS analysis of optimal cutting temperature (OCT) compound removal for the study of mammalian proteomes. The Analyst\| PubMed ID: 24051509	2013
Selective, bead-based global peptide capture using a bifunctional cross-linker. Analytical chemistry\| PubMed ID: 24117407	2013
Comparison of bottom-up proteomic approaches for LC-MS analysis of complex proteomes. Analytical methods : advancing methods and applications\| PubMed ID: 24288579	2013
Correlated mass spectrometry imaging and confocal Raman microscopy for studies of three-dimensional cell culture sections. The Analyst\| PubMed ID: 25030970	2014
Proteomic and Functional Investigation of the Colon Cancer Relapse-Associated Genes NOX4 and ITGA3. Journal of proteome research\| PubMed ID: 25096929	2014