Wenjie Deng

Department of Microbiology, University of Washington

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 5	2015

Other Publications

Article	Year
The zinc-finger protein CNBP is required for forebrain formation in the mouse. Development (Cambridge, England)\| PubMed ID: 12588852	2003
Coping with viral diversity in HIV vaccine design. PLoS computational biology\| PubMed ID: 17465674	2007
ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets. Bioinformatics (Oxford, England)\| PubMed ID: 17586542	2007
Recognition of HIV-1 peptides by host CTL is related to HIV-1 similarity to human proteins. PloS one\| PubMed ID: 17786195	2007
Broad and Gag-biased HIV-1 epitope repertoires are associated with lower viral loads. PloS one\| PubMed ID: 18183304	2008
Env length and N-linked glycosylation following transmission of human immunodeficiency virus Type 1 subtype B viruses. Virology\| PubMed ID: 18314154	2008
Rare HLA drive additional HIV evolution compared to more frequent alleles. AIDS research and human retroviruses\| PubMed ID: 19327049	2009
HIV-1 superinfection in the antiretroviral therapy era: are seroconcordant sexual partners at risk? PloS one\| PubMed ID: 19479055	2009
Conserved HIV-1 epitopes continuously elicit subdominant cytotoxic T-lymphocyte responses. The Journal of infectious diseases\| PubMed ID: 19909083	2009
Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1. Molecular biology and evolution\| PubMed ID: 19955476	2010
DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites. BioTechniques\| PubMed ID: 20569214	2010
Amino-acid co-variation in HIV-1 Gag subtype C: HLA-mediated selection pressure and compensatory dynamics. PloS one\| PubMed ID: 20824187	2010
HIV-1 envelope subregion length variation during disease progression. PLoS pathogens\| PubMed ID: 21187897	2010
Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial. Nature medicine\| PubMed ID: 21358627	2011
Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial. PloS one\| PubMed ID: 21399681	2011
Increased breadth and depth of cytotoxic T lymphocytes responses against HIV-1-B Nef by inclusion of epitope variant sequences. PloS one\| PubMed ID: 21464919	2011
Demographic processes affect HIV-1 evolution in primary infection before the onset of selective processes. Journal of virology\| PubMed ID: 21593162	2011
Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2. Nature\| PubMed ID: 22960785	2012
Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data. Bioinformatics (Oxford, England)\| PubMed ID: 23900188	2013
Quality score based identification and correction of pyrosequencing errors. PloS one\| PubMed ID: 24039850	2013
Improved detection of rare HIV-1 variants using 454 pyrosequencing. PloS one\| PubMed ID: 24098517	2013
Validation of an oligonucleotide ligation assay for quantification of human immunodeficiency virus type 1 drug-resistant mutants by use of massively parallel sequencing. Journal of clinical microbiology\| PubMed ID: 24740080	2014
Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial. Journal of virology\| PubMed ID: 24829343	2014
CD8 and CD4 epitope predictions in RV144: no strong evidence of a T-cell driven sieve effect in HIV-1 breakthrough sequences from trial participants. PloS one\| PubMed ID: 25350851	2014
Performance of commonly used genotypic assays and comparison with phenotypic assays of HIV-1 coreceptor tropism in acutely HIV-1-infected patients. The Journal of antimicrobial chemotherapy\| PubMed ID: 25608585	2015