James I. Mullins

Department of Microbiology, University of Washington

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 5	2015

Other Publications

Article	Year
Curiously modern DNA for a "250 million-year-old" bacterium. Journal of molecular evolution\| PubMed ID: 11734907	2002
Evidence for human immunodeficiency virus type 1 replication in vivo in CD14(+) monocytes and its potential role as a source of virus in patients on highly active antiretroviral therapy. Journal of virology\| PubMed ID: 11752161	2002
Site-directed mutagenesis facilitated by DpnI selection on hemimethylated DNA. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 11768966	2002
Equal plasma viral loads predict a similar rate of CD4+ T cell decline in human immunodeficiency virus (HIV) type 1- and HIV-2-infected individuals from Senegal, West Africa. The Journal of infectious diseases\| PubMed ID: 11920314	2002
Molecular cloning and characterization of Antheraea mylitta cytoplasmic polyhedrosis virus genome segment 9. The Journal of general virology\| PubMed ID: 12029164	2002
Human immunodeficiency virus type 1 bound to B cells: relationship to virus replicating in CD4+ T cells and circulating in plasma. Journal of virology\| PubMed ID: 12163605	2002
Selection for human immunodeficiency virus type 1 recombinants in a patient with rapid progression to AIDS. Journal of virology\| PubMed ID: 12368309	2002
Virus population homogenization following acute human immunodeficiency virus type 1 infection. Journal of virology\| PubMed ID: 12414937	2002
Cellular gene expression upon human immunodeficiency virus type 1 infection of CD4(+)-T-cell lines. Journal of virology\| PubMed ID: 12502855	2003
Genetic characterization of rebounding human immunodeficiency virus type 1 in plasma during multiple interruptions of highly active antiretroviral therapy. Journal of virology\| PubMed ID: 12584346	2003
Consensus and ancestral state HIV vaccines. Science (New York, N.Y.)\| PubMed ID: 12624248	2003
Evolutionary indicators of human immunodeficiency virus type 1 reservoirs and compartments. Journal of virology\| PubMed ID: 12692259	2003
Multiple viral genetic analyses detect low-level human immunodeficiency virus type 1 replication during effective highly active antiretroviral therapy. Journal of virology\| PubMed ID: 12719565	2003
Persistence of extraordinarily low levels of genetically homogeneous human immunodeficiency virus type 1 in exposed seronegative individuals. Journal of virology\| PubMed ID: 12743268	2003
Predicting demographic group structures based on DNA sequence data. Molecular biology and evolution\| PubMed ID: 12777527	2003
Enhanced detection of human immunodeficiency virus type 1-specific T-cell responses to highly variable regions by using peptides based on autologous virus sequences. Journal of virology\| PubMed ID: 12805431	2003
Potential impact of recombination on sitewise approaches for detecting positive natural selection. Genetical research\| PubMed ID: 12872913	2003
Molecular epidemiology of dual HIV-1/HIV-2 seropositive adults from Senegal, West Africa. AIDS research and human retroviruses\| PubMed ID: 12908935	2003
Importance and detection of virus reservoirs and compartments of HIV infection. Current opinion in microbiology\| PubMed ID: 12941414	2003
Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences. Journal of virology\| PubMed ID: 14645592	2003
Dual HIV-1 infection associated with rapid disease progression. Lancet\| PubMed ID: 14987889	2004
Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection. Genetics\| PubMed ID: 15082537	2004
Clinical and immunological impact of HIV envelope V3 sequence variation after starting initial triple antiretroviral therapy. AIDS (London, England)\| PubMed ID: 15090786	2004
Differences in the expressed HLA class I alleles effect the differential clustering of HIV type 1-specific T cell responses in infected Chinese and caucasians. AIDS research and human retroviruses\| PubMed ID: 15186531	2004
Persistence of low levels of simian immunodeficiency virus in macaques that were transiently viremic by conventional testing. Virology\| PubMed ID: 15193917	2004
Compartmentalization of human immunodeficiency virus type 1 between blood monocytes and CD4+ T cells during infection. Journal of virology\| PubMed ID: 15254161	2004
Immunogen sequence: the fourth tier of AIDS vaccine design. Expert review of vaccines\| PubMed ID: 15285713	2004
Pervasive genomic recombination of HIV-1 in vivo. Genetics\| PubMed ID: 15342499	2004
Molecular clock-like evolution of human immunodeficiency virus type 1. Virology\| PubMed ID: 15476878	2004
Longitudinal and cross-sectional studies of HIV-1 RNA and DNA loads in blood and the female genital tract. European journal of obstetrics, gynecology, and reproductive biology\| PubMed ID: 15541862	2004
No evidence for recombination between HIV type 1 and HIV type 2 within the envelope region in dually seropositive individuals from Senegal. AIDS research and human retroviruses\| PubMed ID: 15585083	2004
Preferential detection of HIV subtype C' over subtype A in cervical cells from a dually infected woman. AIDS (London, England)\| PubMed ID: 15905685	2005
Changes in human immunodeficiency virus type 1 fitness and genetic diversity during disease progression. Journal of virology\| PubMed ID: 15994794	2005
Evidence that low-level viremias during effective highly active antiretroviral therapy result from two processes: expression of archival virus and replication of virus. Journal of virology\| PubMed ID: 16014925	2005
Nef induces multiple genes involved in cholesterol synthesis and uptake in human immunodeficiency virus type 1-infected T cells. Journal of virology\| PubMed ID: 16014965	2005
HIV-infected individuals receiving effective antiviral therapy for extended periods of time continually replenish their viral reservoir. The Journal of clinical investigation\| PubMed ID: 16276421	2005
Control of human immunodeficiency virus replication by cytotoxic T lymphocytes targeting subdominant epitopes. Nature immunology\| PubMed ID: 16369537	2006
Sampling designs for HIV molecular epidemiology with application to Honduras. AIDS research and human retroviruses\| PubMed ID: 16386105	2005
Waiting times for the appearance of cytotoxic T-lymphocyte escape mutants in chronic HIV-1 infection. Virology\| PubMed ID: 16387340	2006
Conflicting selective forces affect T cell receptor contacts in an immunodominant human immunodeficiency virus epitope. Nature immunology\| PubMed ID: 16388312	2006
Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host. Journal of virology\| PubMed ID: 16439520	2006
Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1. Journal of virology\| PubMed ID: 16537629	2006
Density-dependent decay in HIV-1 dynamics. Journal of acquired immune deficiency syndromes (1999)\| PubMed ID: 16540927	2006
A reliable phenotype predictor for human immunodeficiency virus type 1 subtype C based on envelope V3 sequences. Journal of virology\| PubMed ID: 16641263	2006
Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes. Journal of virological methods\| PubMed ID: 16701907	2006
Evolution of intrahost HIV-1 genetic diversity during chronic infection. Evolution; international journal of organic evolution\| PubMed ID: 16892967	2006
Selection on the human immunodeficiency virus type 1 proteome following primary infection. Journal of virology\| PubMed ID: 16973556	2006
Differential selection pressure exerted on HIV by CTL targeting identical epitopes but restricted by distinct HLA alleles from the same HLA supertype. Journal of immunology (Baltimore, Md. : 1950)\| PubMed ID: 16982909	2006
Comprehensive epitope analysis of cross-clade Gag-specific T-cell responses in individuals with early HIV-1 infection in the US epidemic. Vaccine\| PubMed ID: 17112643	2007
CD8+ T-cell responses to different HIV proteins have discordant associations with viral load. Nature medicine\| PubMed ID: 17173051	2007
Control of human immunodeficiency virus type 1 is associated with HLA-B*13 and targeting of multiple gag-specific CD8+ T-cell epitopes. Journal of virology\| PubMed ID: 17251285	2007
Extensive intrasubtype recombination in South African human immunodeficiency virus type 1 subtype C infections. Journal of virology\| PubMed ID: 17314156	2007
Presenting plasma HIV RNA level and rate of CD4 T-cell decline. JAMA\| PubMed ID: 17327518	2007
Enhanced detection of human immunodeficiency virus type 1 (HIV-1) Nef-specific T cells recognizing multiple variants in early HIV-1 infection. Journal of virology\| PubMed ID: 17329342	2007
Founder effects in the assessment of HIV polymorphisms and HLA allele associations. Science (New York, N.Y.)\| PubMed ID: 17363674	2007
Coping with viral diversity in HIV vaccine design. PLoS computational biology\| PubMed ID: 17465674	2007
Decay of the HIV reservoir in patients receiving antiretroviral therapy for extended periods: implications for eradication of virus. The Journal of infectious diseases\| PubMed ID: 17492591	2007
Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B*5703-restricted Gag epitope in chronic human immunodeficiency virus t... Journal of virology\| PubMed ID: 17507468	2007
Prevalence and genetic diversity of HIV type 1 subtypes A and D in women attending antenatal clinics in Uganda. AIDS research and human retroviruses\| PubMed ID: 17531003	2007
Reconstruction and function of ancestral center-of-tree human immunodeficiency virus type 1 proteins. Journal of virology\| PubMed ID: 17537854	2007
HIV-specific probabilistic models of protein evolution. PloS one\| PubMed ID: 17551583	2007
ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets. Bioinformatics (Oxford, England)\| PubMed ID: 17586542	2007
Methods used to examine compartmentalization of viral populations between the genital tract and peripheral blood. The Journal of infectious diseases\| PubMed ID: 17597465	2007
HIV type 1 superinfection with a dual-tropic virus and rapid progression to AIDS: a case report. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America\| PubMed ID: 17638203	2007
HIV-1 over time: fitness loss or robustness gain? Nature reviews. Microbiology\| PubMed ID: 17703224	2007
Evolution of human immunodeficiency virus type 1 cytotoxic T-lymphocyte epitopes: fitness-balanced escape. Journal of virology\| PubMed ID: 17728222	2007
Recognition of HIV-1 peptides by host CTL is related to HIV-1 similarity to human proteins. PloS one\| PubMed ID: 17786195	2007
Novel cytotoxic T-lymphocyte escape mutation by a three-amino-acid insertion in the human immunodeficiency virus type 1 p6Pol and p6Gag late domain associated with drug resistance. Journal of virology\| PubMed ID: 17942528	2008
HIV-1 group M conserved elements vaccine. PLoS pathogens\| PubMed ID: 18052528	2007
Blood monocytes harbor HIV type 1 strains with diversified phenotypes including macrophage-specific CCR5 virus. The Journal of infectious diseases\| PubMed ID: 18173363	2008
Broad and Gag-biased HIV-1 epitope repertoires are associated with lower viral loads. PloS one\| PubMed ID: 18183304	2008
Lack of evidence for changing virulence of HIV-1 in North America. PloS one\| PubMed ID: 18253479	2008
Persistence of HIV in gut-associated lymphoid tissue despite long-term antiretroviral therapy. The Journal of infectious diseases\| PubMed ID: 18260759	2008
Increased detection of HIV-specific T cell responses by combination of central sequences with comparable immunogenicity. AIDS (London, England)\| PubMed ID: 18301057	2008
Env length and N-linked glycosylation following transmission of human immunodeficiency virus Type 1 subtype B viruses. Virology\| PubMed ID: 18314154	2008
HIV-1 variation before seroconversion in men who have sex with men: analysis of acute/early HIV infection in the multicenter AIDS cohort study. The Journal of infectious diseases\| PubMed ID: 18419538	2008
Male genital tract compartmentalization of human immunodeficiency virus type 1 (HIV). AIDS research and human retroviruses\| PubMed ID: 18426336	2008
HLA class I-driven evolution of human immunodeficiency virus type 1 subtype c proteome: immune escape and viral load. Journal of virology\| PubMed ID: 18434400	2008
Comparison of immunogen designs that optimize peptide coverage: reply to Fischer et al. PLoS computational biology\| PubMed ID: 18463692	2008
Central role of reverting mutations in HLA associations with human immunodeficiency virus set point. Journal of virology\| PubMed ID: 18596105	2008
Evolution of CCR5 use before and during coreceptor switching. Journal of virology\| PubMed ID: 18815295	2008
Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag. PLoS computational biology\| PubMed ID: 19023406	2008
Emergence of multiclass drug-resistance in HIV-2 in antiretroviral-treated individuals in Senegal: implications for HIV-2 treatment in resouce-limited West Africa. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America\| PubMed ID: 19143530	2009
Rare HLA drive additional HIV evolution compared to more frequent alleles. AIDS research and human retroviruses\| PubMed ID: 19327049	2009
Monotypic human immunodeficiency virus type 1 genotypes across the uterine cervix and in blood suggest proliferation of cells with provirus. Journal of virology\| PubMed ID: 19339344	2009
Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response. PLoS pathogens\| PubMed ID: 19343217	2009
Increased mutations in Env and Pol suggest greater HIV-1 replication in sputum-derived viruses compared with blood-derived viruses. AIDS (London, England)\| PubMed ID: 19349849	2009
Viral evolution and escape during primary human immunodeficiency virus-1 infection: implications for vaccine design. Current opinion in HIV and AIDS\| PubMed ID: 19372945	2008
Sources of variation in ancestral sequence reconstruction for HIV-1 envelope genes. Evolutionary bioinformatics online\| PubMed ID: 19455202	2006
HIV-1 superinfection in the antiretroviral therapy era: are seroconcordant sexual partners at risk? PloS one\| PubMed ID: 19479055	2009
Preinfection human immunodeficiency virus (HIV)-specific cytotoxic T lymphocytes failed to prevent HIV type 1 infection from strains genetically unrelated to viruses in long-term exposed par... Journal of virology\| PubMed ID: 19706711	2009
Fidelity of SNP array genotyping using Epstein Barr virus-transformed B-lymphocyte cell lines: implications for genome-wide association studies. PloS one\| PubMed ID: 19730697	2009
Evidence for limited genetic compartmentalization of HIV-1 between lung and blood. PloS one\| PubMed ID: 19759830	2009
Conserved HIV-1 epitopes continuously elicit subdominant cytotoxic T-lymphocyte responses. The Journal of infectious diseases\| PubMed ID: 19909083	2009
Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1. Molecular biology and evolution\| PubMed ID: 19955476	2010
Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS. The Journal of infectious diseases\| PubMed ID: 20064070	2010
Virus-specific CD8+ T-cell responses better define HIV disease progression than HLA genotype. Journal of virology\| PubMed ID: 20147397	2010
Restriction of HIV-1 genotypes in breast milk does not account for the population transmission genetic bottleneck that occurs following transmission. PloS one\| PubMed ID: 20422033	2010
DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites. BioTechniques\| PubMed ID: 20569214	2010
Genetic analyses of HIV-1 env sequences demonstrate limited compartmentalization in breast milk and suggest viral replication within the breast that increases with mastitis. Journal of virology\| PubMed ID: 20660189	2010
Multiple-cohort genetic association study reveals CXCR6 as a new chemokine receptor involved in long-term nonprogression to AIDS. The Journal of infectious diseases\| PubMed ID: 20704485	2010
Amino-acid co-variation in HIV-1 Gag subtype C: HLA-mediated selection pressure and compensatory dynamics. PloS one\| PubMed ID: 20824187	2010
Viral evolution and escape during acute HIV-1 infection. The Journal of infectious diseases\| PubMed ID: 20846038	2010
Estimating the impact of plasma HIV-1 RNA reductions on heterosexual HIV-1 transmission risk. PloS one\| PubMed ID: 20856886	2010
Comment on "The origins of sexually transmitted HIV among men who have sex with men". Science translational medicine\| PubMed ID: 20861507	2010
Dendritic cells reveal a broad range of MHC class I epitopes for HIV-1 in persons with suppressed viral load on antiretroviral therapy. PloS one\| PubMed ID: 20886040	2010
Screening low-frequency SNPS from genome-wide association study reveals a new risk allele for progression to AIDS. Journal of acquired immune deficiency syndromes (1999)\| PubMed ID: 21107268	2011
HIV-1 envelope subregion length variation during disease progression. PLoS pathogens\| PubMed ID: 21187897	2010
Preclinical evaluation of HIV-1 therapeutic ex vivo dendritic cell vaccines expressing consensus Gag antigens and conserved Gag epitopes. Vaccine\| PubMed ID: 21241732	2011
Mutation of HIV-1 genomes in a clinical population treated with the mutagenic nucleoside KP1461. PloS one\| PubMed ID: 21264288	2011
Dynamics of viral evolution and CTL responses in HIV-1 infection. PloS one\| PubMed ID: 21283794	2011
Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial. Nature medicine\| PubMed ID: 21358627	2011
Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial. PloS one\| PubMed ID: 21399681	2011
Increased breadth and depth of cytotoxic T lymphocytes responses against HIV-1-B Nef by inclusion of epitope variant sequences. PloS one\| PubMed ID: 21464919	2011
Genital HIV-1 RNA predicts risk of heterosexual HIV-1 transmission. Science translational medicine\| PubMed ID: 21471433	2011
Demographic processes affect HIV-1 evolution in primary infection before the onset of selective processes. Journal of virology\| PubMed ID: 21593162	2011
Preparing for the availability of a partially effective HIV vaccine: some lessons from other licensed vaccines. Vaccine\| PubMed ID: 21745523	2011
CD39/adenosine pathway is involved in AIDS progression. PLoS pathogens\| PubMed ID: 21750674	2011
HIV-2 integrase variation in integrase inhibitor-naïve adults in Senegal, West Africa. PloS one\| PubMed ID: 21765953	2011
Phenotypic susceptibility of HIV-2 to raltegravir: integrase mutations Q148R and N155H confer raltegravir resistance. AIDS (London, England)\| PubMed ID: 21971360	2011
Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission. AIDS (London, England)\| PubMed ID: 22089381	2012
Definition of the viral targets of protective HIV-1-specific T cell responses. Journal of translational medicine\| PubMed ID: 22152067	2011
Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure. PloS one\| PubMed ID: 22174851	2011
CTL responses of high functional avidity and broad variant cross-reactivity are associated with HIV control. PloS one\| PubMed ID: 22238642	2012
Towards an HIV cure: a global scientific strategy. Nature reviews. Immunology\| PubMed ID: 22814509	2012
MRKAd5 HIV-1 Gag/Pol/Nef Vaccine-Induced T-Cell Responses Inadequately Predict Distance of Breakthrough HIV-1 Sequences to the Vaccine or Viral Load. PloS one\| PubMed ID: 22952672	2012
Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2. Nature\| PubMed ID: 22960785	2012
Three main mutational pathways in HIV-2 lead to high-level raltegravir and elvitegravir resistance: implications for emerging HIV-2 treatment regimens. PloS one\| PubMed ID: 23028968	2012
Partner characteristics predicting HIV-1 set point in sexually acquired HIV-1 among African seroconverters. AIDS research and human retroviruses\| PubMed ID: 23061422	2013
An increasing proportion of monotypic HIV-1 DNA sequences during antiretroviral treatment suggests proliferation of HIV-infected cells. Journal of virology\| PubMed ID: 23175380	2013
A sensitive real-time PCR based assay to estimate the impact of amino acid substitutions on the competitive replication fitness of human immunodeficiency virus type 1 in cell culture. Journal of virological methods\| PubMed ID: 23201292	2013
Coverage of primary mother-to-child HIV transmission isolates by second-generation broadly neutralizing antibodies. AIDS (London, England)\| PubMed ID: 23296195	2013
Plasma viral loads during early HIV-1 infection are similar in subtype C- and non-subtype C-infected African seroconverters. The Journal of infectious diseases\| PubMed ID: 23315322	2013
Human immunodeficiency viruses appear compartmentalized to the female genital tract in cross-sectional analyses but genital lineages do not persist over time. The Journal of infectious diseases\| PubMed ID: 23315326	2013
HIV-1 conserved-element vaccines: relationship between sequence conservation and replicative capacity. Journal of virology\| PubMed ID: 23468488	2013
HIV-1 p24(gag) derived conserved element DNA vaccine increases the breadth of immune response in mice. PloS one\| PubMed ID: 23555935	2013
Complex patterns of protease inhibitor resistance among antiretroviral treatment-experienced HIV-2 patients from Senegal: implications for second-line therapy. Antimicrobial agents and chemotherapy\| PubMed ID: 23571535	2013
Superior Control of HIV-1 Replication by CD8+ T Cells Targeting Conserved Epitopes: Implications for HIV Vaccine Design. PloS one\| PubMed ID: 23741326	2013
Fitness costs of mutations at the HIV-1 capsid hexamerization interface. PloS one\| PubMed ID: 23785468	2013
Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data. Bioinformatics (Oxford, England)\| PubMed ID: 23900188	2013
Selective induction of CTL helper rather than killer activity by natural epitope variants promotes dendritic cell-mediated HIV-1 dissemination. Journal of immunology (Baltimore, Md. : 1950)\| PubMed ID: 23913962	2013
Factors affecting relative fitness measurements in pairwise competition assays of human immunodeficiency viruses. Journal of virological methods\| PubMed ID: 23933395	2013
Association Study of Common Genetic Variants and HIV-1 Acquisition in 6,300 Infected Cases and 7,200 Controls. PLoS pathogens\| PubMed ID: 23935489	2013
Inferring viral population structures using heteroduplex mobility and DNA sequence analyses. Journal of virological methods\| PubMed ID: 23994080	2013
Quality score based identification and correction of pyrosequencing errors. PloS one\| PubMed ID: 24039850	2013
Improved detection of rare HIV-1 variants using 454 pyrosequencing. PloS one\| PubMed ID: 24098517	2013
Adhesion and fusion efficiencies of human immunodeficiency virus type 1 (HIV-1) surface proteins. Scientific reports\| PubMed ID: 24145278	2013
Increased sequence coverage through combined targeting of variant and conserved epitopes correlates with control of HIV replication. Journal of virology\| PubMed ID: 24227851	2014
Toll-like receptor polymorphism associations with HIV-1 outcomes among sub-Saharan Africans. The Journal of infectious diseases\| PubMed ID: 24325963	2014
HIV-1 subtype C is not associated with higher risk of heterosexual HIV-1 transmission: a multinational study among HIV-1 serodiscordant couples. AIDS (London, England)\| PubMed ID: 24413311	2014
Variants in host viral replication cycle genes are associated with heterosexual HIV-1 acquisition in Africans. Journal of acquired immune deficiency syndromes (1999)\| PubMed ID: 24463784	2014
Altered response hierarchy and increased T-cell breadth upon HIV-1 conserved element DNA vaccination in macaques. PloS one\| PubMed ID: 24465991	2014
The impact of viral evolution and frequency of variant epitopes on primary and memory human immunodeficiency virus type 1-specific CD8⁺ T cell responses. Virology\| PubMed ID: 24503065	2014
Impact of mutations in highly conserved amino acids of the HIV-1 Gag-p24 and Env-gp120 proteins on viral replication in different genetic backgrounds. PloS one\| PubMed ID: 24713822	2014
Validation of an oligonucleotide ligation assay for quantification of human immunodeficiency virus type 1 drug-resistant mutants by use of massively parallel sequencing. Journal of clinical microbiology\| PubMed ID: 24740080	2014
Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial. Journal of virology\| PubMed ID: 24829343	2014
Lack of resistance to integrase inhibitors among antiretroviral-naive subjects with primary HIV-1 infection, 2007-2013. Antiviral therapy\| PubMed ID: 24831260	2015
HIV-1 superinfection with a triple-class drug-resistant strain in a patient successfully controlled with antiretroviral treatment. AIDS (London, England)\| PubMed ID: 24911350	2014
Dendritic cells restore CD8+ T cell reactivity to autologous HIV-1. Journal of virology\| PubMed ID: 24942586	2014
An HIV epidemic model based on viral load dynamics: value in assessing empirical trends in HIV virulence and community viral load. PLoS computational biology\| PubMed ID: 24945322	2014
HIV latency. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science (New York, N.Y.)\| PubMed ID: 25011556	2014
HIV-1 conserved elements p24CE DNA vaccine induces humoral immune responses with broad epitope recognition in macaques. PloS one\| PubMed ID: 25338098	2014
CD8 and CD4 epitope predictions in RV144: no strong evidence of a T-cell driven sieve effect in HIV-1 breakthrough sequences from trial participants. PloS one\| PubMed ID: 25350851	2014
Host genetic and viral determinants of HIV-1 RNA set point among HIV-1 seroconverters from sub-saharan Africa. Journal of virology\| PubMed ID: 25473042	2015
Spontaneous control of HIV-1 viremia in a subject with protective HLA-B plus HLA-C alleles and HLA-C associated single nucleotide polymorphisms. Journal of translational medicine\| PubMed ID: 25477316	2014
Vaccine-induced Human Antibodies Specific for the Third Variable Region of HIV-1 gp120 Impose Immune Pressure on Infecting Viruses. EBioMedicine\| PubMed ID: 25599085	2014
Performance of commonly used genotypic assays and comparison with phenotypic assays of HIV-1 coreceptor tropism in acutely HIV-1-infected patients. The Journal of antimicrobial chemotherapy\| PubMed ID: 25608585	2015
Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial. PLoS computational biology\| PubMed ID: 25646817	2015
p21(WAF1/CIP1) RNA expression in highly HIV-1 exposed, uninfected individuals. PloS one\| PubMed ID: 25746435	2015
In vitro activity of dolutegravir against wild-type and integrase inhibitor-resistant HIV-2. Retrovirology\| PubMed ID: 25808007	2015
A human immune data-informed vaccine concept elicits strong and broad T-cell specificities associated with HIV-1 control in mice and macaques. Journal of translational medicine\| PubMed ID: 25879820	2015
How often does treatment of primary HIV lead to post-treatment control? Antiviral therapy\| PubMed ID: 25906138	2015