Josh D. Neufeld

Department of Biology, University of Waterloo

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 70	2010

Other Publications

Article	Year
Serial analysis of ribosomal sequence tags (SARST): a high-throughput method for profiling complex microbial communities. Environmental microbiology\| PubMed ID: 14756878	2004
Fluorophore-labeled primers improve the sensitivity, versatility, and normalization of denaturing gradient gel electrophoresis. Applied and environmental microbiology\| PubMed ID: 16085891	2005
Unexpectedly high bacterial diversity in arctic tundra relative to boreal forest soils, revealed by serial analysis of ribosomal sequence tags. Applied and environmental microbiology\| PubMed ID: 16204479	2005
Distribution and phylogeny of hexachlorocyclohexane-degrading bacteria in soils from Spain. Environmental microbiology\| PubMed ID: 16343322	2006
Composition of microbial communities in hexachlorocyclohexane (HCH) contaminated soils from Spain revealed with a habitat-specific microarray. Environmental microbiology\| PubMed ID: 16343328	2006
Methodological considerations for the use of stable isotope probing in microbial ecology. Microbial ecology\| PubMed ID: 17072677	2007
Handlebar: a flexible, web-based inventory manager for handling barcoded samples. BioTechniques\| PubMed ID: 17390536	2007
DNA stable-isotope probing. Nature protocols\| PubMed ID: 17446886	2007
Who eats what, where and when? Isotope-labelling experiments are coming of age. The ISME journal\| PubMed ID: 18043620	2007
Witnessing the last supper of uncultivated microbial cells with Raman-FISH. The ISME journal\| PubMed ID: 18043637	2007
Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism. The ISME journal\| PubMed ID: 18043650	2007
Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology. The ISME journal\| PubMed ID: 18256705	2008
Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics. Environmental microbiology\| PubMed ID: 18294205	2008
Scratching the surface of the rare biosphere with ribosomal sequence tag primers. FEMS microbiology letters\| PubMed ID: 18429998	2008
Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands. Environmental microbiology\| PubMed ID: 18631364	2008
Methane assimilation and trophic interactions with marine Methylomicrobium in deep-water coral reef sediment off the coast of Norway. FEMS microbiology ecology\| PubMed ID: 18811651	2008
Substrate-specific clades of active marine methylotrophs associated with a phytoplankton bloom in a temperate coastal environment. Applied and environmental microbiology\| PubMed ID: 18849453	2008
Metagenomic analysis of isotopically enriched DNA. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 20830556	2010
Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads. Applied and environmental microbiology\| PubMed ID: 21460107	2011
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature biotechnology\| PubMed ID: 21552244	2011
Omics for understanding microbial functional dynamics. Environmental microbiology\| PubMed ID: 21651688	2012
Prevalence of anaerobic ammonium-oxidizing bacteria in contaminated groundwater. Environmental science & technology\| PubMed ID: 21786759	2011
Aquarium nitrification revisited: Thaumarchaeota are the dominant ammonia oxidizers in freshwater aquarium biofilters. PloS one\| PubMed ID: 21858055	2011
Active autotrophic ammonia-oxidizing bacteria in biofilm enrichments from simulated creek ecosystems at two ammonium concentrations respond to temperature manipulation. Applied and environmental microbiology\| PubMed ID: 21890674	2011
Butyric acid- and dimethyl disulfide-assimilating microorganisms in a biofilter treating air emissions from a livestock facility. Applied and environmental microbiology\| PubMed ID: 22003018	2011
Nonlinear electrophoresis for purification of soil DNA for metagenomics. Journal of microbiological methods\| PubMed ID: 22056233	2012
PANDAseq: PAired-eND Assembler for Illumina sequences. BMC bioinformatics\| PubMed ID: 22333067	2012