Hongkui Zeng

Cell Types Program, Allen Institute for Brain Science

Affiliated withAllen Institute for Brain Science

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 346	2018

Other Publications

Article	Year
Thyrotropin-releasing hormone receptor 1-deficient mice display increased depression and anxiety-like behavior. Molecular endocrinology (Baltimore, Md.)\| PubMed ID: 17666589	2007
A robust and high-throughput Cre reporting and characterization system for the whole mouse brain. Nature neuroscience\| PubMed ID: 20023653	2010
Visual tuning properties of genetically identified layer 2/3 neuronal types in the primary visual cortex of cre-transgenic mice. Frontiers in systems neuroscience\| PubMed ID: 21283555	2011
Mouse transgenic approaches in optogenetics. Progress in brain research\| PubMed ID: 22341327	2012
A Cre-dependent GCaMP3 reporter mouse for neuronal imaging in vivo. The Journal of neuroscience : the official journal of the Society for Neuroscience\| PubMed ID: 22378886	2012
A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing. Nature neuroscience\| PubMed ID: 22446880	2012
Adeno-associated viral vectors for anterograde axonal tracing with fluorescent proteins in nontransgenic and cre driver mice. Current protocols in neuroscience\| PubMed ID: 22470147	2012
Large-scale cellular-resolution gene profiling in human neocortex reveals species-specific molecular signatures. Cell\| PubMed ID: 22500809	2012
Correlated gene expression and target specificity demonstrate excitatory projection neuron diversity. Cerebral cortex (New York, N.Y. : 1991)\| PubMed ID: 24014670	2015
Medial habenula output circuit mediated by α5 nicotinic receptor-expressing GABAergic neurons in the interpeduncular nucleus. The Journal of neuroscience : the official journal of the Society for Neuroscience\| PubMed ID: 24227714	2013
Systematic comparison of adeno-associated virus and biotinylated dextran amine reveals equivalent sensitivity between tracers and novel projection targets in the mouse brain. The Journal of comparative neurology\| PubMed ID: 24639291	2014
A mesoscale connectome of the mouse brain. Nature\| PubMed ID: 24695228	2014
Scalable control of mounting and attack by Esr1+ neurons in the ventromedial hypothalamus. Nature\| PubMed ID: 24739975	2014
Transcriptional regulation of enhancers active in protodomains of the developing cerebral cortex. Neuron\| PubMed ID: 24814534	2014
Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis. Nature communications\| PubMed ID: 25014658	2014
Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation. Frontiers in neural circuits\| PubMed ID: 25071457	2014
Experience-dependent remodeling of basket cell networks in the dentate gyrus. Neuron\| PubMed ID: 25277456	2014
Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures. Neuroinformatics\| PubMed ID: 25310965	2015
Neuroinformatics of the Allen Mouse Brain Connectivity Atlas. Methods (San Diego, Calif.)\| PubMed ID: 25536338	2015
Vasoactive intestinal polypeptide (VIP)-expressing neurons in the suprachiasmatic nucleus provide sparse GABAergic outputs to local neurons with circadian regulation occurring distal to the ... The Journal of neuroscience : the official journal of the Society for Neuroscience\| PubMed ID: 25653351	2015
Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance. Neuron\| PubMed ID: 25741722	2015
Ca(2+) signaling in astrocytes from Ip3r2(-/-) mice in brain slices and during startle responses in vivo. Nature neuroscience\| PubMed ID: 25894291	2015
Lineage Tracing Using Cux2-Cre and Cux2-CreERT2 Mice. Neuron\| PubMed ID: 25996136	2015
Validation of optical voltage reporting by the genetically encoded voltage indicator VSFP-Butterfly from cortical layer 2/3 pyramidal neurons in mouse brain slices. Physiological reports\| PubMed ID: 26229003	2015
Electron Microscopy at Scale. Cell\| PubMed ID: 26232218	2015
3D Image-Guided Automatic Pipette Positioning for Single Cell Experiments in vivo. Scientific reports\| PubMed ID: 26689553	2015
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics. Nature neuroscience\| PubMed ID: 26727548	2016
Resolution of High-Frequency Mesoscale Intracortical Maps Using the Genetically Encoded Glutamate Sensor iGluSnFR. The Journal of neuroscience : the official journal of the Society for Neuroscience\| PubMed ID: 26818514	2016
Organization of the connections between claustrum and cortex in the mouse. The Journal of comparative neurology\| PubMed ID: 27223051	2017
Inferring cortical function in the mouse visual system through large-scale systems neuroscience. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 27382147	2016
Integration of autopatching with automated pipette and cell detection in vitro. Journal of neurophysiology\| PubMed ID: 27385800	2016
Subpallial Enhancer Transgenic Lines: a Data and Tool Resource to Study Transcriptional Regulation of GABAergic Cell Fate. Neuron\| PubMed ID: 27710791	2016
Genetically Targeted All-Optical Electrophysiology with a Transgenic Cre-Dependent Optopatch Mouse. The Journal of neuroscience : the official journal of the Society for Neuroscience\| PubMed ID: 27798186	2016
Two-Photon Holographic Stimulation of ReaChR. Frontiers in cellular neuroscience\| PubMed ID: 27803649	2016
Long-Term Optical Access to an Estimated One Million Neurons in the Live Mouse Cortex. Cell reports\| PubMed ID: 28009304	2016
Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex. eLife\| PubMed ID: 28112643	2017
Diverse Central Projection Patterns of Retinal Ganglion Cells. Cell reports\| PubMed ID: 28228269	2017
Specific connections of the interpeduncular subnuclei reveal distinct components of the habenulopeduncular pathway. The Journal of comparative neurology\| PubMed ID: 28387937	2017
Identification of preoptic sleep neurons using retrograde labelling and gene profiling. Nature\| PubMed ID: 28514446	2017
A robot for high yield electrophysiology and morphology of single neurons in vivo. Nature communications\| PubMed ID: 28569837	2017
Neocortical Chandelier Cells Developmentally Shape Axonal Arbors through Reorganization but Establish Subcellular Synapse Specificity without Refinement. eNeuro\| PubMed ID: 28584877	2017
An R-CaMP1.07 reporter mouse for cell-type-specific expression of a sensitive red fluorescent calcium indicator. PloS one\| PubMed ID: 28640817	2017
Neuronal cell-type classification: challenges, opportunities and the path forward. Nature reviews. Neuroscience\| PubMed ID: 28775344	2017
SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology. Scientific reports\| PubMed ID: 28839271	2017
Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines. eNeuro\| PubMed ID: 28932809	2017
Local processing in neurites of VGluT3-expressing amacrine cells differentially organizes visual information. eLife\| PubMed ID: 29022876	2017
The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas. Neuron\| PubMed ID: 29096072	2017
Generation of a whole-brain atlas for the cholinergic system and mesoscopic projectome analysis of basal forebrain cholinergic neurons. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 29259118	2018
Systematic generation of biophysically detailed models for diverse cortical neuron types. Nature communications\| PubMed ID: 29459718	2018
Generalized leaky integrate-and-fire models classify multiple neuron types. Nature communications\| PubMed ID: 29459723	2018