David S. Wishart

David S. Wishart

Department of Computer Science, University of Alberta

Affiliated withUniversity of Alberta

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 1
Year
A Web Tool for Generating High Quality Machine-readable Biological Pathways
Publication title

Cited by 9

2017

Other Publications

Article
Year
Identification of novel and known oocyte-specific genes using complementary DNA subtraction and microarray analysis in three different species.

Biology of reproduction| PubMed ID: 15744023

2005
2002
2002
RefDB: a database of uniformly referenced protein chemical shifts.

Journal of biomolecular NMR| PubMed ID: 12652131

2003
2003
2003
2003
2003
2004
2004
2004
2004
2004
2004
2004
2004
Circular genome visualization and exploration using CGView.

Bioinformatics (Oxford, England)| PubMed ID: 15479716

2005
2004
2005
2005
2004
2005
Bioinformatics in drug development and assessment.

Drug metabolism reviews| PubMed ID: 15931766

2005
2005
2005
BASys: a web server for automated bacterial genome annotation.

Nucleic acids research| PubMed ID: 15980511

2005
Solution Structure of MTH0776 from Methanobacterium thermoautotrophicum.

Journal of biomolecular NMR| PubMed ID: 16222557

2005
A simple method to predict protein flexibility using secondary chemical shifts.

Journal of the American Chemical Society| PubMed ID: 16248604

2005
2006
2006
2006
2006
Automated bacterial genome analysis and annotation.

Current opinion in microbiology| PubMed ID: 16931121

2006
Metabolomics in monitoring kidney transplants.

Current opinion in nephrology and hypertension| PubMed ID: 17053480

2006
HMDB: the Human Metabolome Database.

Nucleic acids research| PubMed ID: 17202168

2007
2007
NMR: prediction of protein flexibility.

Nature protocols| PubMed ID: 17406296

2006
2007
Proteomics and the human metabolome project.

Expert review of proteomics| PubMed ID: 17552914

2007
2007
Current progress in computational metabolomics.

Briefings in bioinformatics| PubMed ID: 17626065

2007
PPT-DB: the protein property prediction and testing database.

Nucleic acids research| PubMed ID: 17916570

2008
2007
2007
Application of the random coil index to studying protein flexibility.

Journal of biomolecular NMR| PubMed ID: 17985196

2008
BioSpider: a web server for automating metabolome annotations.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing| PubMed ID: 17990488

2007
2008
2007
Metabolomics: a complementary tool in renal transplantation.

Contributions to nephrology| PubMed ID: 18401163

2008
Introduction to cheminformatics.

Current protocols in bioinformatics| PubMed ID: 18428788

2007
In silico drug exploration and discovery using DrugBank.

Current protocols in bioinformatics| PubMed ID: 18428789

2007
2008
2008
2008
The human cerebrospinal fluid metabolome.

Journal of chromatography. B, Analytical technologies in the biomedical and life sciences| PubMed ID: 18502700

2008
Protein contact order prediction from primary sequences.

BMC bioinformatics| PubMed ID: 18513429

2008
2008
DrugBank and its relevance to pharmacogenomics.

Pharmacogenomics| PubMed ID: 18681788

2008
PSA fluoroimmunoassays using anti-PSA ScFv and quantum-dot conjugates.

Nanomedicine (London, England)| PubMed ID: 18694310

2008
2008
HMDB: a knowledgebase for the human metabolome.

Nucleic acids research| PubMed ID: 18953024

2009
2008
In silico identification of genes in bacteriophage DNA.

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 19082552

2009
2008
Exploring human metabolites using the human metabolome database.

Current protocols in bioinformatics| PubMed ID: 19274632

2009
2009
2009
2009
2009
2007
2010
Solid phase synthesis of acylglycine human metabolites.

Bioorganic & medicinal chemistry letters| PubMed ID: 19836947

2009
2010
Computational systems biology in cancer: modeling methods and applications.

Gene regulation and systems biology| PubMed ID: 19936081

2007
SMPDB: The Small Molecule Pathway Database.

Nucleic acids research| PubMed ID: 19948758

2010
Computational approaches to metabolomics.

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 19957155

2010
2010
2010
Transcriptional response of E. coli upon FimH-mediated fimbrial adhesion.

Gene regulation and systems biology| PubMed ID: 20458372

2010
PROSESS: a protein structure evaluation suite and server.

Nucleic acids research| PubMed ID: 20460469

2010
Discovering drug targets through the web.

Comparative biochemistry and physiology. Part D, Genomics & proteomics| PubMed ID: 20483274

2007
MetPA: a web-based metabolomics tool for pathway analysis and visualization.

Bioinformatics (Oxford, England)| PubMed ID: 20628077

2010
2011
2009
2011
Interpreting protein chemical shift data.

Progress in nuclear magnetic resonance spectroscopy| PubMed ID: 21241884

2011
The human serum metabolome.

PloS one| PubMed ID: 21359215

2011
2011
SHIFTX2: significantly improved protein chemical shift prediction.

Journal of biomolecular NMR| PubMed ID: 21448735

2011
Metabolomic data processing, analysis, and interpretation using MetaboAnalyst.

Current protocols in bioinformatics| PubMed ID: 21633943

2011
2011
PHAST: a fast phage search tool.

Nucleic acids research| PubMed ID: 21672955

2011
2011
2011
Advances in metabolite identification.

Bioanalysis| PubMed ID: 21827274

2011
The prion protein binds thiamine.

The FEBS journal| PubMed ID: 21848803

2011
2011
Intermolecular transmission of superoxide dismutase 1 misfolding in living cells.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 21930926

2011
YMDB: the Yeast Metabolome Database.

Nucleic acids research| PubMed ID: 22064855

2012
2011
2012
2012
Discovery of small molecule inhibitors that interact with γ-tubulin.

Chemical biology & drug design| PubMed ID: 22268380

2012
2012
2012
2012
2012
Metabolomics and first-trimester prediction of early-onset preeclampsia.

The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians| PubMed ID: 22494326

2012
2012
2012
2012
2012
2013
ECMDB: the E. coli Metabolome Database.

Nucleic acids research| PubMed ID: 23109553

2013
First-trimester metabolomic detection of late-onset preeclampsia.

American journal of obstetrics and gynecology| PubMed ID: 23159745

2013
HMDB 3.0--The Human Metabolome Database in 2013.

Nucleic acids research| PubMed ID: 23161693

2013
2013
2012
Chapter 3: Small molecules and disease.

PLoS computational biology| PubMed ID: 23300405

2012
Metabolomic analysis for first-trimester Down syndrome prediction.

American journal of obstetrics and gynecology| PubMed ID: 23313728

2013
2013
2013
2013
Metabolomic analysis for first-trimester trisomy 18 detection.

American journal of obstetrics and gynecology| PubMed ID: 23535240

2013
Translational biomarker discovery in clinical metabolomics: an introductory tutorial.

Metabolomics : Official journal of the Metabolomic Society| PubMed ID: 23543913

2013
2013
2013
Recommendations of the wwPDB NMR Validation Task Force.

Structure (London, England : 1993)| PubMed ID: 24010715

2013
The human urine metabolome.

PloS one| PubMed ID: 24023812

2013
A simple method to measure protein side-chain mobility using NMR chemical shifts.

Journal of the American Chemical Society| PubMed ID: 24032347

2013
2013
2013
2014
DrugBank 4.0: shedding new light on drug metabolism.

Nucleic acids research| PubMed ID: 24203711

2014
2013
2014
2013
Metabolomic prediction of fetal congenital heart defect in the first trimester.

American journal of obstetrics and gynecology| PubMed ID: 24704061

2014
The food metabolome: a window over dietary exposure.

The American journal of clinical nutrition| PubMed ID: 24760973

2014
2014
2014
2014
2015
2014
Salmonella phages and prophages: genomics, taxonomy, and applied aspects.

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 25253259

2015
CSI 2.0: a significantly improved version of the Chemical Shift Index.

Journal of biomolecular NMR| PubMed ID: 25273503

2014
2015
The use of metabolomics in population-based research.

Advances in nutrition (Bethesda, Md.)| PubMed ID: 25398741

2014
2015
2015
MetaboAnalyst 3.0--making metabolomics more meaningful.

Nucleic acids research| PubMed ID: 25897128

2015
Pathways with PathWhiz.

Nucleic acids research| PubMed ID: 25934797

2015
2015
2015
2015
2015
Accessible surface area from NMR chemical shifts.

Journal of biomolecular NMR| PubMed ID: 26078090

2015
2015
Validation of metabolomic models for prediction of early-onset preeclampsia.

American journal of obstetrics and gynecology| PubMed ID: 26116099

2015
2015
2015
2015
2015
2016
2016
2015
2016
2016
2016
2016
Introduction to Cheminformatics.

Current protocols in bioinformatics| PubMed ID: 27010335

2016
2016
Heatmapper: web-enabled heat mapping for all.

Nucleic acids research| PubMed ID: 27190236

2016
Using DrugBank for In Silico Drug Exploration and Discovery.

Current protocols in bioinformatics| PubMed ID: 27322405

2016
2016
Metabolomic determination of pathogenesis of late-onset preeclampsia.

The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians| PubMed ID: 27569705

2017
The future of NMR-based metabolomics.

Current opinion in biotechnology| PubMed ID: 27580257

2016
Using MetaboAnalyst 3.0 for Comprehensive Metabolomics Data Analysis.

Current protocols in bioinformatics| PubMed ID: 27603023

2016
Metabolomics enables precision medicine: "A White Paper, Community Perspective".

Metabolomics : Official journal of the Metabolomic Society| PubMed ID: 27642271

2016
2016
SPLASH, a hashed identifier for mass spectra.

Nature biotechnology| PubMed ID: 27824832

2016
2016
2017
2017
2016
2017
2016
2017
2017