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A Web Tool for Generating High Quality Machine-readable Biological Pathways
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Biology
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JoVE Journal Biology
A Web Tool for Generating High Quality Machine-readable Biological Pathways

A Web Tool for Generating High Quality Machine-readable Biological Pathways

DOI:
10.3791/54869-v

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08:01 min

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February 08, 2017

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, , , , ,
1Department of Computer Science,University of Alberta, 2Department of Biological Sciences,University of Alberta

Chapters

  • 00:05Title
  • 00:45Pathway Generation
  • 03:08Reaction Editing
  • 04:53Pathway Replication, Viewing, and Downloading
  • 05:50Results: Representative Pathway Editing Options
  • 06:34Conclusion

Summary

Automatic Translation

Automatic Translation

PathWhiz is a comprehensive, online pathway drawing tool for generating biochemical and biological pathways. It uses publicly accessible databases and easily expandable palettes consisting of pre-drawn pathway components. This protocol describes how to easily build new pathways, replicate and edit existing pathways, and propagate previously drawn pathways to different organisms.

Tags

Web ToolPathway GenerationMachine-readableBiochemical PathwaysPathWhizVisual Pathway CreatorBiological DetailComplexityPublic GalleryOperating SystemNew PathwayOrganismSpeciesTaxonomyReferencesReactionsReactantsProductsEnzymesStoichiometryElement TypeReaction DirectionEnzyme Addition

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