Jyoti S. Choudhary

Proteomic Mass Spectrometry, Wellcome Trust Sanger Institute

Affiliated withWellcome Trust Sanger Institute Wellcome Trust Sanger Institute, Wellcome Genome Campus Institute of Cancer Research

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 9	2017
Publication title Cited by 3	2018

Other Publications

Article	Year
Proteomic analysis of in vivo phosphorylated synaptic proteins. The Journal of biological chemistry\| PubMed ID: 15572359	2005
Robust enrichment of phosphorylated species in complex mixtures by sequential protein and peptide metal-affinity chromatography and analysis by tandem mass spectrometry. Science's STKE : signal transduction knowledge environment\| PubMed ID: 16118397	2005
Molecular characterization and comparison of the components and multiprotein complexes in the postsynaptic proteome. Journal of neurochemistry\| PubMed ID: 16635246	2006
Analysis of protein phosphorylation on a proteome-scale. Proteomics\| PubMed ID: 17703509	2007
Phosphoproteomic analysis of the mouse brain cytosol reveals a predominance of protein phosphorylation in regions of intrinsic sequence disorder. Molecular & cellular proteomics : MCP\| PubMed ID: 18388127	2008
Evolutionary expansion and anatomical specialization of synapse proteome complexity. Nature neuroscience\| PubMed ID: 18536710	2008
Mapping multiprotein complexes by affinity purification and mass spectrometry. Current opinion in biotechnology\| PubMed ID: 18598764	2008
Neurotransmitters drive combinatorial multistate postsynaptic density networks. Science signaling\| PubMed ID: 19401593	2009
Targeted tandem affinity purification of PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins. Molecular systems biology\| PubMed ID: 19455133	2009
Prmt5 is essential for early mouse development and acts in the cytoplasm to maintain ES cell pluripotency. Genes & development\| PubMed ID: 21159818	2010
Characterization of the proteome, diseases and evolution of the human postsynaptic density. Nature neuroscience\| PubMed ID: 21170055	2011
Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome. Genome research\| PubMed ID: 21460061	2011
Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux. PLoS pathogens\| PubMed ID: 21490962	2011
Quantitative proteomics reveals the basis for the biochemical specificity of the cell-cycle machinery. Molecular cell\| PubMed ID: 21816347	2011
APC15 drives the turnover of MCC-CDC20 to make the spindle assembly checkpoint responsive to kinetochore attachment. Nature cell biology\| PubMed ID: 21926987	2011
Coordinating cell cycle progression via cyclin specificity. Cell cycle (Georgetown, Tex.)\| PubMed ID: 22156915	2011
Assignment of protein interactions from affinity purification/mass spectrometry data. Journal of proteome research\| PubMed ID: 22283744	2012
Enhanced peptide identification by electron transfer dissociation using an improved Mascot Percolator. Molecular & cellular proteomics : MCP\| PubMed ID: 22493177	2012
A Plasmodium calcium-dependent protein kinase controls zygote development and transmission by translationally activating repressed mRNAs. Cell host & microbe\| PubMed ID: 22817984	2012
Analysis of protein palmitoylation reveals a pervasive role in Plasmodium development and pathogenesis. Cell host & microbe\| PubMed ID: 22901544	2012
Comparative study of human and mouse postsynaptic proteomes finds high compositional conservation and abundance differences for key synaptic proteins. PloS one\| PubMed ID: 23071613	2012
A polygenic burden of rare disruptive mutations in schizophrenia. Nature\| PubMed ID: 24463508	2014
The OMSSAPercolator: an automated tool to validate OMSSA results. Proteomics\| PubMed ID: 24504981	2014
Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism. BMC genomics\| PubMed ID: 24568651	2014
Confident and sensitive phosphoproteomics using combinations of collision induced dissociation and electron transfer dissociation. Journal of proteomics\| PubMed ID: 24657495	2014
A new method to determine in vivo interactomes reveals binding of the Legionella pneumophila effector PieE to multiple rab GTPases. mBio\| PubMed ID: 25118235	2014
Human post-mortem synapse proteome integrity screening for proteomic studies of postsynaptic complexes. Molecular brain\| PubMed ID: 25429717	2014
Palmitoylation and palmitoyl-transferases in Plasmodium parasites. Biochemical Society transactions\| PubMed ID: 25849924	2015
Cyclic diGMP regulates production of sortase substrates of Clostridium difficile and their surface exposure through ZmpI protease-mediated cleavage. The Journal of biological chemistry\| PubMed ID: 26283789	2015
Quantitative proteomic analysis of Shigella flexneri and Shigella sonnei Generalized Modules for Membrane Antigens (GMMA) reveals highly pure preparations. International journal of medical microbiology : IJMM\| PubMed ID: 26746581	2016
Study of Plasmodium falciparum DHHC palmitoyl transferases identifies a role for PfDHHC9 in gametocytogenesis. Cellular microbiology\| PubMed ID: 27060339	2016
Interferon-driven alterations of the host's amino acid metabolism in the pathogenesis of typhoid fever. The Journal of experimental medicine\| PubMed ID: 27217537	2016
Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow. Nature communications\| PubMed ID: 27250503	2016
DecoyPyrat: Fast Non-redundant Hybrid Decoy Sequence Generation for Large Scale Proteomics. Journal of proteomics & bioinformatics\| PubMed ID: 27418748	2016
OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nature methods\| PubMed ID: 27575624	2016
Flexible Data Analysis Pipeline for High-Confidence Proteogenomics. Journal of proteome research\| PubMed ID: 27786492	2016
Evolution of complexity in the zebrafish synapse proteome. Nature communications\| PubMed ID: 28252024	2017
Myst2/Kat7 histone acetyltransferase interaction proteomics reveals tumour-suppressor Niam as a novel binding partner in embryonic stem cells. Scientific reports\| PubMed ID: 28811661	2017
Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells. Cell reports\| PubMed ID: 28854368	2017
Sub-minute Phosphoregulation of Cell Cycle Systems during Plasmodium Gamete Formation. Cell reports\| PubMed ID: 29141230	2017
Delineating the HMGB1 and HMGB2 interactome in prostate and ovary epithelial cells and its relationship with cancer. Oncotarget\| PubMed ID: 29721183	2018