Herbert Levine

Department of Bioengineering, Rice University

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 7	2017

Other Publications

Article	Year
Stability of the hybrid epithelial/mesenchymal phenotype. Oncotarget\| PubMed ID: 27008704	2016
Establishing direction during chemotaxis in eukaryotic cells. Biophysical journal\| PubMed ID: 12202361	2002
Mode-I fracture in a nonlinear lattice with viscoelastic forces. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 12241445	2002
Spectral mixing of rhythmic neuronal signals in sensory cortex. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 12403828	2002
Comment on "dynamics of HIV infection: a cellular automata approach". Physical review letters\| PubMed ID: 12443459	2002
Dynamics of competitive evolution on a smooth landscape. Physical review letters\| PubMed ID: 12633464	2003
Coupled map lattice techniques for simulating interfacial phenomena in reaction-diffusion systems. Chaos (Woodbury, N.Y.)\| PubMed ID: 12779983	1992
Modeling spatial patterns in Dictyostelium. Chaos (Woodbury, N.Y.)\| PubMed ID: 12780133	1994
Wave nucleation rate in excitable systems in the low noise limit. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 14524810	2003
Does the continuum theory of dynamic fracture work? Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 14524843	2003
Shunting inhibition controls the gain modulation mediated by asynchronous neurotransmitter release in early development. PLoS computational biology\| PubMed ID: 21079676	2010
Computational approach for modeling intra- and extracellular dynamics. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 14524934	2003
Analytical study of the effect of recombination on evolution via DNA shuffling. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 15244851	2004
Bacterial linguistic communication and social intelligence. Trends in microbiology\| PubMed ID: 15276612	2004
Domain swapping is a consequence of minimal frustration. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 15361578	2004
Dynamic instabilities of fracture under biaxial strain using a phase field model. Physical review letters\| PubMed ID: 15447417	2004
Recombination dramatically speeds up evolution of finite populations. Physical review letters\| PubMed ID: 15784005	2005
Fluctuation-regularized front propagation dynamics in reaction-diffusion systems. Physical review letters\| PubMed ID: 15904196	2005
Protein oligomerization through domain swapping: role of inter-molecular interactions and protein concentration. Journal of molecular biology\| PubMed ID: 16061250	2005
Excitation-contraction coupling gain and cooperativity of the cardiac ryanodine receptor: a modeling approach. Biophysical journal\| PubMed ID: 16126827	2005
Physical schemata underlying biological pattern formation-examples, issues and strategies. Physical biology\| PubMed ID: 16204813	2004
Cooperativity can reduce stochasticity in intracellular calcium dynamics. Physical biology\| PubMed ID: 16204819	2004
Structure of infectious prions: stabilization by domain swapping. FASEB journal : official publication of the Federation of American Societies for Experimental Biology\| PubMed ID: 16260647	2005
Division accuracy in a stochastic model of Min oscillations in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 16387859	2006
Membrane-bound Turing patterns. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 16485979	2005
Front propagation up a reaction rate gradient. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 16486029	2005
Analytic approach to the evolutionary effects of genetic exchange. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 16486222	2006
Directional sensing in eukaryotic chemotaxis: a balanced inactivation model. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 16782813	2006
Embryonic pattern scaling achieved by oppositely directed morphogen gradients. Physical biology\| PubMed ID: 16829697	2006
Self-engineering capabilities of bacteria. Journal of the Royal Society, Interface / the Royal Society\| PubMed ID: 16849231	2006
Fluctuation-induced instabilities in front propagation up a comoving reaction gradient in two dimensions. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 16907163	2006
Effective stochastic dynamics on a protein folding energy landscape. The Journal of chemical physics\| PubMed ID: 16942260	2006
The astrocyte as a gatekeeper of synaptic information transfer. Neural computation\| PubMed ID: 17206866	2007
Quantifying noise levels of intercellular signals. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 17677298	2007
Folding time predictions from all-atom replica exchange simulations. Journal of molecular biology\| PubMed ID: 17681536	2007
Target-specific and global effectors in gene regulation by MicroRNA. Biophysical journal\| PubMed ID: 17872959	2007
Correlated phenotypic transitions to competence in bacterial colonies. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 17994927	2007
Small regulatory RNAs may sharpen spatial expression patterns. PLoS computational biology\| PubMed ID: 18052540	2007
Astrocytes optimize the synaptic transmission of information. PLoS computational biology\| PubMed ID: 18516277	2008
Coexistence of amplitude and frequency modulations in intracellular calcium dynamics. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 18517322	2008
Activity-dependent stochastic resonance in recurrent neuronal networks. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 18643209	2008
Receptor noise and directional sensing in eukaryotic chemotaxis. Physical review letters\| PubMed ID: 18643461	2008
Multimodal encoding in a simplified model of intracellular calcium signaling. Cognitive processing\| PubMed ID: 19030904	2009
Receptor noise limitations on chemotactic sensing. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 19064934	2008
A mathematical analysis of second messenger compartmentalization. Physical biology\| PubMed ID: 19075354	2008
The fixation probability of rare mutators in finite asexual populations. Genetics\| PubMed ID: 19153261	2009
Determining the scale of the Bicoid morphogen gradient. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 19190186	2009
Mechanisms and constraints on yeast MAPK signaling specificity. Biophysical journal\| PubMed ID: 19527636	2009
Locally balanced dendritic integration by short-term synaptic plasticity and active dendritic conductances. Journal of neurophysiology\| PubMed ID: 19759328	2009
Signal processing in local neuronal circuits based on activity-dependent noise and competition. Chaos (Woodbury, N.Y.)\| PubMed ID: 19791987	2009
Compartmentalization of second messengers in neurons: a mathematical analysis. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 19905336	2009
Phenomenological approach to eukaryotic chemotactic efficiency. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 20365769	2010
External and internal constraints on eukaryotic chemotaxis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 20457897	2010
Transient localized patterns in noise-driven reaction-diffusion systems. Physical review letters\| PubMed ID: 20482022	2010
A comparison of deterministic and stochastic simulations of neuronal vesicle release models. Physical biology\| PubMed ID: 20505227	2010
The role of cell contraction and adhesion in dictyostelium motility. Biophysical journal\| PubMed ID: 20655832	2010
Optimal strategy for competence differentiation in bacteria. PLoS genetics\| PubMed ID: 20838595	2010
Computational model for cell morphodynamics. Physical review letters\| PubMed ID: 20867552	2010
Physical limits on cellular sensing of spatial gradients. Physical review letters\| PubMed ID: 20867888	2010
Gradient sensing in defined chemotactic fields. Integrative biology : quantitative biosciences from nano to macro\| PubMed ID: 20882228	2010
Modelling vesicular release at hippocampal synapses. PLoS computational biology\| PubMed ID: 21085682	2010
Design principles and specificity in biological networks with cross activation. Physical biology\| PubMed ID: 21263168	2011
How geometry and internal bias affect the accuracy of eukaryotic gradient sensing. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 21405873	2011
Quantifying information transmission in eukaryotic gradient sensing and chemotactic response. Journal of statistical physics\| PubMed ID: 21643513	2011
Activated membrane patches guide chemotactic cell motility. PLoS computational biology\| PubMed ID: 21738453	2011
"Self-assisted" amoeboid navigation in complex environments. PloS one\| PubMed ID: 21829602	2011
Propagating mode-I fracture in amorphous materials using the continuous random network model. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 21929059	2011
Effects of input noise on a simple biochemical switch. Physical review letters\| PubMed ID: 22107236	2011
Incoherent feedforward control governs adaptation of activated ras in a eukaryotic chemotaxis pathway. Science signaling\| PubMed ID: 22215733	2012
Noise effects in nonlinear biochemical signaling. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 22400585	2012
Coupling actin flow, adhesion, and morphology in a computational cell motility model. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22493219	2012
Bacterial survival strategies suggest rethinking cancer cooperativity. Trends in microbiology\| PubMed ID: 22750098	2012
Short-term plasticity constrains spatial organization of a hippocampal presynaptic terminal. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22908295	2012
Alignment of cellular motility forces with tissue flow as a mechanism for efficient wound healing. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23345440	2013
How input fluctuations reshape the dynamics of a biological switching system. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 23367979	2012
Large population solution of the stochastic Luria-Delbruck evolution model. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23818583	2013
Energy evaluation of β-strand packing in a fibril-forming SH3 domain. The journal of physical chemistry. B\| PubMed ID: 23819485	2013
We need theoretical physics approaches to study living systems. Physical biology\| PubMed ID: 23883648	2013
Scientific priorities for the BRAIN Initiative. Nature methods\| PubMed ID: 23900253	2013
MicroRNA-based regulation of epithelial-hybrid-mesenchymal fate determination. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24154725	2013
Periodic migration in a physical model of cells on micropatterns. Physical review letters\| PubMed ID: 24160631	2013
Modeling cell-death patterning during biofilm formation. Physical biology\| PubMed ID: 24275528	2013
Growth feedback as a basis for persister bistability. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24344277	2014
The physics of eukaryotic chemotaxis. Physics today\| PubMed ID: 24363460	2013
Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24449878	2014
Physical Biology : challenges for our second decade. Physical biology\| PubMed ID: 24732666	2014
Intercellular stress reconstitution from traction force data. Biophysical journal\| PubMed ID: 25099794	2014
Introduction to physics in cancer research. Cancer research\| PubMed ID: 25183782	2014
Resistance to chemotherapy: patient variability and cellular heterogeneity. Cancer research\| PubMed ID: 25183790	2014
Cellular memory in eukaryotic chemotaxis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 25249632	2014
Polarity mechanisms such as contact inhibition of locomotion regulate persistent rotational motion of mammalian cells on micropatterns. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 25258412	2014
Learning physics of living systems from Dictyostelium. Physical biology\| PubMed ID: 25294248	2014
How input noise limits biochemical sensing in ultrasensitive systems. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 25314468	2014
Towards elucidating the connection between epithelial-mesenchymal transitions and stemness. Journal of the Royal Society, Interface / the Royal Society\| PubMed ID: 25339690	2014
Connecting thermal and mechanical protein (un)folding landscapes. Biophysical journal\| PubMed ID: 25517160	2014
Mechanically-driven phase separation in a growing bacterial colony. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 25870260	2015
OVOL guides the epithelial-hybrid-mesenchymal transition. Oncotarget\| PubMed ID: 25944618	2015
Alignment and nonlinear elasticity in biopolymer gels. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 25974530	2015
Properties of cooperatively induced phases in sensing models. Physical review. E, Statistical, nonlinear, and soft matter physics\| PubMed ID: 26066199	2015
Implications of the Hybrid Epithelial/Mesenchymal Phenotype in Metastasis. Frontiers in oncology\| PubMed ID: 26258068	2015
Coupling the modules of EMT and stemness: A tunable 'stemness window' model. Oncotarget\| PubMed ID: 26317796	2015
Micromechanics of cellularized biopolymer networks. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 26324923	2015
The motility-proliferation-metabolism interplay during metastatic invasion. Scientific reports\| PubMed ID: 26337223	2015
Nonlinear elasticity of disordered fiber networks. Soft matter\| PubMed ID: 26616428	2016
Excitable waves and direction-sensing in Dictyostelium discoideum: steps towards a chemotaxis model. Physical biology\| PubMed ID: 26824302	2016
Modeling closure of circular wounds through coordinated collective motion. Physical biology\| PubMed ID: 26871883	2016
Scaling solution in the large population limit of the general asymmetric stochastic Luria-Delbrück evolution process. Journal of statistical physics\| PubMed ID: 26900175	2015
Contact inhibition of locomotion determines cell-cell and cell-substrate forces in tissues. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 26903658	2016
Immunoproteasome deficiency is a feature of non-small cell lung cancer with a mesenchymal phenotype and is associated with a poor outcome. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 26929325	2016
Emergent Collective Chemotaxis without Single-Cell Gradient Sensing. Physical review letters\| PubMed ID: 26991203	2016
Tumor Budding: The Name is EMT. Partial EMT. Journal of clinical medicine\| PubMed ID: 27136592	2016
Notch-Jagged signalling can give rise to clusters of cells exhibiting a hybrid epithelial/mesenchymal phenotype. Journal of the Royal Society, Interface\| PubMed ID: 27170649	2016
Collective Signal Processing in Cluster Chemotaxis: Roles of Adaptation, Amplification, and Co-attraction in Collective Guidance. PLoS computational biology\| PubMed ID: 27367541	2016
Mesenchymal-Epithelial Transition in Sarcomas Is Controlled by the Combinatorial Expression of MicroRNA 200s and GRHL2. Molecular and cellular biology\| PubMed ID: 27402864	2016
Phenotypic plasticity in prostate cancer: role of intrinsically disordered proteins. Asian journal of andrology\| PubMed ID: 27427552	2016
Expanding the scale of molecular biophysics. Physical biology\| PubMed ID: 27716638	2016
Modeling delayed processes in biological systems. Physical review. E\| PubMed ID: 27739721	2016
Mechanical bounds to transcriptional noise. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 27911801	2016
Modeling the Genetic Regulation of Cancer Metabolism: Interplay between Glycolysis and Oxidative Phosphorylation. Cancer research\| PubMed ID: 28202516	2017
Crawling and turning in a minimal reaction-diffusion cell motility model: Coupling cell shape and biochemistry. Physical review. E\| PubMed ID: 28208438	2017
The GRHL2/ZEB Feedback Loop - A Key Axis in the Regulation of EMT in Breast Cancer. Journal of cellular biochemistry\| PubMed ID: 28266048	2017
Phosphorylation-induced conformational dynamics in an intrinsically disordered protein and potential role in phenotypic heterogeneity. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 28289210	2017