Namshin Kim

Personalized Genomic Medicine Research Center, korea research institute of bioscience and biotechnology

Affiliated withkorea research institute of bioscience and biotechnology

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 5	2017

Other Publications

Article	Year
ASmodeler: gene modeling of alternative splicing from genomic alignment of mRNA, EST and protein sequences. Nucleic acids research\| PubMed ID: 15215376	2004
ECgene: genome annotation for alternative splicing. Nucleic acids research\| PubMed ID: 15608289	2005
ECgene: genome-based EST clustering and gene modeling for alternative splicing. Genome research\| PubMed ID: 15805497	2005
ASePCR: alternative splicing electronic RT-PCR in multiple tissues and organs. Nucleic acids research\| PubMed ID: 15980562	2005
ChimerDB--a knowledgebase for fusion sequences. Nucleic acids research\| PubMed ID: 16381848	2006
The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species. Nucleic acids research\| PubMed ID: 17108355	2007
ECgene: an alternative splicing database update. Nucleic acids research\| PubMed ID: 17132829	2007
Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes. RNA (New York, N.Y.)\| PubMed ID: 17369312	2007
Three-Dimensional Phylogeny Explorer: distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption with 3D visualization. BMC bioinformatics\| PubMed ID: 17584922	2007
QPRIMER: a quick web-based application for designing conserved PCR primers from multigenome alignments. Bioinformatics (Oxford, England)\| PubMed ID: 17599926	2007
Bioinformatics detection of alternative splicing. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 18566765	2008
Integration site preference of xenotropic murine leukemia virus-related virus, a new human retrovirus associated with prostate cancer. Journal of virology\| PubMed ID: 18684813	2008
The effect of intron length on exon creation ratios during the evolution of mammalian genomes. RNA (New York, N.Y.)\| PubMed ID: 18796579	2008
Human immunodeficiency virus integration efficiency and site selection in quiescent CD4+ T cells. Journal of virology\| PubMed ID: 19369341	2009
A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. BMC genomics\| PubMed ID: 19379481	2009
Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication. Genome biology\| PubMed ID: 19821981	2009
ChimerDB 2.0--a knowledgebase for fusion genes updated. Nucleic acids research\| PubMed ID: 19906715	2010
Massive expansions of Dscam splicing diversity via staggered homologous recombination during arthropod evolution. RNA (New York, N.Y.)\| PubMed ID: 19934230	2010
High-throughput, sensitive quantification of repopulating hematopoietic stem cell clones. Journal of virology\| PubMed ID: 20844053	2010
Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842T), a plant growth-promoting bacterium. Journal of bacteriology\| PubMed ID: 21742878	2011
Methodology and software to detect viral integration site hot-spots. BMC bioinformatics\| PubMed ID: 21914224	2011
Whole-exome sequencing identifies mutations of KIF22 in spondyloepimetaphyseal dysplasia with joint laxity, leptodactylic type. American journal of human genetics\| PubMed ID: 22152677	2011
Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing. BMC plant biology\| PubMed ID: 23163954	2012
Dynamic genetic features of chromosomes revealed by comparison of soybean genetic and sequence-based physical maps. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 23306355	2013
A high-dimensional, deep-sequencing study of lung adenocarcinoma in female never-smokers. PloS one\| PubMed ID: 23405175	2013
Investigation of radiation-induced transcriptome profile of radioresistant non-small cell lung cancer A549 cells using RNA-seq. PloS one\| PubMed ID: 23533613	2013
Bioinformatics interpretation of exome sequencing: blood cancer. Genomics & informatics\| PubMed ID: 23613679	2013
Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity. BMC genomics\| PubMed ID: 23899338	2013
Massively parallel sequencing of Chikso (Korean brindle cattle) to discover genome-wide SNPs and InDels. Molecules and cells\| PubMed ID: 23912596	2013
Analysis of the canine brain transcriptome with an emphasis on the hypothalamus and cerebral cortex. Mammalian genome : official journal of the International Mammalian Genome Society\| PubMed ID: 24202129	2013
Population structure and domestication revealed by high-depth resequencing of Korean cultivated and wild soybean genomes. DNA research : an international journal for rapid publication of reports on genes and genomes\| PubMed ID: 24271940	2014
Transcription-related element gene expression pattern differs between microglia and macrophages during inflammation. Inflammation research : official journal of the European Histamine Research Society ... [et al.]\| PubMed ID: 24468891	2014
Dynamics of HSPC repopulation in nonhuman primates revealed by a decade-long clonal-tracking study. Cell stem cell\| PubMed ID: 24702996	2014
Whole-exome sequencing identifies a novel genotype-phenotype correlation in the entactin domain of the known deafness gene TECTA. PloS one\| PubMed ID: 24816743	2014
The complete mitochondrial genome of cultivated radish WK10039 (Raphanus sativus L.). Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis\| PubMed ID: 24937570	2016
Whole-genome analyses of Korean native and Holstein cattle breeds by massively parallel sequencing. PloS one\| PubMed ID: 24992012	2014
Comparative analysis of the radish genome based on a conserved ortholog set (COS) of Brassica. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 25056003	2014
Complete Genome Sequence of Bacillus anthracis HYU01, Isolated from Soil Samples in the Korean Peninsula. Genome announcements\| PubMed ID: 25103761	2014
Global transcriptome profiling of genes that are differentially regulated during differentiation of mouse embryonic neural stem cells into astrocytes. Journal of molecular neuroscience : MN\| PubMed ID: 25104607	2015
De novo assembly and characterization of the complete chloroplast genome of radish (Raphanus sativus L.). Gene\| PubMed ID: 25151309	2014
Deep sequencing reveals low incidence of endogenous LINE-1 retrotransposition in human induced pluripotent stem cells. PloS one\| PubMed ID: 25289675	2014
Construction of a reference genetic map of Raphanus sativus based on genotyping by whole-genome resequencing. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 25403353	2015
Orthopaedic manifestations and treatment outcome of two siblings with Escobar syndrome and homozygous mutations in the CHRNG gene. Journal of pediatric orthopedics. Part B\| PubMed ID: 25411939	2015
Development, validation and genetic analysis of a large soybean SNP genotyping array. The Plant journal : for cell and molecular biology\| PubMed ID: 25641104	2015
A genome-wide scan for signatures of directional selection in domesticated pigs. BMC genomics\| PubMed ID: 25765548	2015
Whole exome sequencing for a patient with Rubinstein-Taybi syndrome reveals de novo variants besides an overt CREBBP mutation. International journal of molecular sciences\| PubMed ID: 25768348	2015
Frequency and spectrum of actionable pathogenic secondary findings in 196 Korean exomes. Genetics in medicine : official journal of the American College of Medical Genetics\| PubMed ID: 25856671	2015
Exploring the genetic signature of body size in Yucatan miniature pig. PloS one\| PubMed ID: 25885114	2015
Adverse prognostic effect of homozygous TET2 mutation on the relapse risk of acute myeloid leukemia in patients of normal karyotype. Haematologica\| PubMed ID: 26045292	2015
Whole-genome resequencing analyses of five pig breeds, including Korean wild and native, and three European origin breeds. DNA research : an international journal for rapid publication of reports on genes and genomes\| PubMed ID: 26117497	2015
Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals. Plant physiology\| PubMed ID: 26175514	2015
Effect of Next-Generation Exome Sequencing Depth for Discovery of Diagnostic Variants. Genomics & informatics\| PubMed ID: 26175660	2015
Transcriptomic Features of Bovine Blastocysts Derived by Somatic Cell Nuclear Transfer. G3 (Bethesda, Md.)\| PubMed ID: 26342001	2015
Prognostic and functional importance of the engraftment-associated genes in the patient-derived xenograft models of triple-negative breast cancers. Breast cancer research and treatment\| PubMed ID: 26438141	2015
Identification of haplotypes at the Rsv4 genomic region in soybean associated with durable resistance to soybean mosaic virus. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 26649868	2016
The Clinical Significance and Molecular Features of the Spatial Tumor Shapes in Breast Cancers. PloS one\| PubMed ID: 26669540	2015
CLEC4C p.K210del variant causes impaired cell surface transport in plasmacytoid dendritic cells of amyotrophic lateral sclerosis. Oncotarget\| PubMed ID: 26943047	2016
Response to Biesecker. Genetics in medicine : official journal of the American College of Medical Genetics\| PubMed ID: 26963279	2016
Elucidating the triplicated ancestral genome structure of radish based on chromosome-level comparison with the Brassica genomes. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 27038817	2016
Copy number variations in Hanwoo and Yanbian cattle genomes using the massively parallel sequencing data. Gene\| PubMed ID: 27188257	2016
Identification of candidate domestication regions in the radish genome based on high-depth resequencing analysis of 17 genotypes. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\| PubMed ID: 27377547	2016