Philip E. Johnson

Department of Chemistry, York University

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 1	2017

Other Publications

Article	Year
Assembly PCR oligo maker: a tool for designing oligodeoxynucleotides for constructing long DNA molecules for RNA production. Nucleic acids research\| PubMed ID: 15980526	2005
RNA recognition by the Vts1p SAM domain. Nature structural & molecular biology\| PubMed ID: 16429155	2006
The three-dimensional structure of the Moorella thermoacetica selenocysteine insertion sequence RNA hairpin and its interaction with the elongation factor SelB. RNA (New York, N.Y.)\| PubMed ID: 17901155	2007
Enhanced NMR signal detection of imino protons in RNA molecules containing 3' dangling nucleotides. Journal of biomolecular NMR\| PubMed ID: 18273681	2008
Structure of the cytosine-cytosine mismatch in the thymidylate synthase mRNA binding site and analysis of its interaction with the aminoglycoside paromomycin. RNA (New York, N.Y.)\| PubMed ID: 19329536	2009
Defining a stem length-dependent binding mechanism for the cocaine-binding aptamer. A combined NMR and calorimetry study. Biochemistry\| PubMed ID: 20735071	2010
Identification of RNA-ligand interactions by affinity electrophoresis. Analytical biochemistry\| PubMed ID: 20875777	2011
Defining the secondary structural requirements of a cocaine-binding aptamer by a thermodynamic and mutation study. Biophysical chemistry\| PubMed ID: 21035241	2010
Thermodynamic and NMR analysis of inhibitor binding to dihydrofolate reductase. Bioorganic & medicinal chemistry\| PubMed ID: 21084197	2010
Finding the path in an RNA folding landscape. Structure (London, England : 1993)\| PubMed ID: 21134633	2010
Engineering a structure switching mechanism into a steroid-binding aptamer and hydrodynamic analysis of the ligand binding mechanism. Biochemistry\| PubMed ID: 21942676	2011
Kinetic capillary electrophoresis with mass-spectrometry detection (KCE-MS) facilitates label-free solution-based kinetic analysis of protein-small molecule binding. Chembiochem : a European journal of chemical biology\| PubMed ID: 22012742	2011
Quantitative affinity electrophoresis of RNA-small molecule interactions by cross-linking the ligand to acrylamide. Analytical biochemistry\| PubMed ID: 23928050	2013
Quinine binding by the cocaine-binding aptamer. Thermodynamic and hydrodynamic analysis of high-affinity binding of an off-target ligand. Biochemistry\| PubMed ID: 24175947	2013
Kinetic size-exclusion chromatography with mass spectrometry detection: an approach for solution-based label-free kinetic analysis of protein-small molecule interactions. Analytical chemistry\| PubMed ID: 25275785	2014
Pre-equilibration kinetic size-exclusion chromatography with mass spectrometry detection (peKSEC-MS) for label-free solution-based kinetic analysis of protein-small molecule interactions. The Analyst\| PubMed ID: 25611307	2015
Structure-affinity relationship of the cocaine-binding aptamer with quinine derivatives. Bioorganic & medicinal chemistry\| PubMed ID: 25858454	2015
Salt-mediated two-site ligand binding by the cocaine-binding aptamer. Nucleic acids research\| PubMed ID: 28025391	2017
Comparison of the free and ligand-bound imino hydrogen exchange rates for the cocaine-binding aptamer. Journal of biomolecular NMR\| PubMed ID: 28477231	2017
Development of a thermal-stable structure-switching cocaine-binding aptamer. Biochimie\| PubMed ID: 28838608	2017
Optimizing Stem Length To Improve Ligand Selectivity in a Structure-Switching Cocaine-Binding Aptamer. ACS sensors\| PubMed ID: 28929744	2017