Mitchel J. Doktycz

Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee

Affiliated withUniversity of Tennessee Oak Ridge National Laboratory

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 11	2017
$Liquid Chromatography Coupled to Refractive Index or Mass Spectrometric Detection for Metabolite Profiling in Lysate-based Cell-free Systems$ Publication title Cited by 6	2021

Other Publications

Article	Year
Comparative analyses of the secondary structures of synthetic and intracellular yeast MFA2 mRNAs. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 9843938	1998
Fingerprinting of prokaryotic 16S rRNA genes using oligodeoxyribonucleotide microarrays and virtual hybridization. Nucleic acids research\| PubMed ID: 12527788	2003
Genomes to Life "Center for Molecular and Cellular Systems": a research program for identification and characterization of protein complexes. Omics : a journal of integrative biology\| PubMed ID: 12630408	2002
AFM imaging of bacteria in liquid media immobilized on gelatin coated mica surfaces. Ultramicroscopy\| PubMed ID: 12801673	2003
Optimized beadmilling of tissues for high-throughput RNA production and microarray-based analyses. Analytical biochemistry\| PubMed ID: 15301954	2004
Evaluation of a surface-sampling probe electrospray mass spectrometry system for the analysis of surface-deposited and affinity-captured proteins. Rapid communications in mass spectrometry : RCM\| PubMed ID: 16521171	2006
The near-naked hairless (Hr(N)) mutation disrupts hair formation but is not due to a mutation in the Hairless coding region. The Journal of investigative dermatology\| PubMed ID: 17330134	2007
Nano-enabled synthetic biology. Molecular systems biology\| PubMed ID: 17625513	2007
Controlling the Dimensions of Carbon Nanofiber Structures through the Electropolymerization of Pyrrole. Synthetic metals\| PubMed ID: 18431459	2007
A general system for studying protein-protein interactions in Gram-negative bacteria. Journal of proteome research\| PubMed ID: 18590317	2008
Actuatable membranes based on polypyrrole-coated vertically aligned carbon nanofibers. ACS nano\| PubMed ID: 19206624	2008
Positional control of catalyst nanoparticles for the synthesis of high density carbon nanofiber arrays. Carbon\| PubMed ID: 19448842	2008
Effects of ultramicroelectrode dimensions on the electropolymerization of polypyrrole. Journal of applied physics\| PubMed ID: 19657404	2009
An in vivo imaging-based assay for detecting protein interactions over a wide range of binding affinities. Analytical biochemistry\| PubMed ID: 19698693	2009
Development and fabrication of nanoporous silicon-based bioreactors within a microfluidic chip. Lab on a chip\| PubMed ID: 20390137	2010
Silver nanocrystallites: biofabrication using Shewanella oneidensis, and an evaluation of their comparative toxicity on gram-negative and gram-positive bacteria. Environmental science & technology\| PubMed ID: 20509652	2010
Surface charge- and space-dependent transport of proteins in crowded environments of nanotailored posts. ACS nano\| PubMed ID: 20515056	2010
Atomic force microscopy of biological samples. Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology\| PubMed ID: 20672388	2010
Effects of engineered cerium oxide nanoparticles on bacterial growth and viability. Applied and environmental microbiology\| PubMed ID: 20952651	2010
Characterization of cell surface and extracellular matrix remodeling of Azospirillum brasilense chemotaxis-like 1 signal transduction pathway mutants by atomic force microscopy. FEMS microbiology letters\| PubMed ID: 21105907	2011
Biofabrication of discrete spherical gold nanoparticles using the metal-reducing bacterium Shewanella oneidensis. Acta biomaterialia\| PubMed ID: 21241833	2011
Cell Free Translation in Engineered Picoliter Volume Containers. Annual ORNL Biomedical Science and Engineering Center Conference ORNL Biomedical Science and Engineering Center Conference\| PubMed ID: 21278819	2009
Effects of sub-minimum inhibitory concentrations of ciprofloxacin on enteroaggregative Escherichia coli and the role of the surface protein dispersin. International journal of antimicrobial agents\| PubMed ID: 21570813	2011
Model for biological communication in a nanofabricated cell-mimic driven by stochastic resonance. Nano communication networks\| PubMed ID: 21731597	2011
Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. Applied and environmental microbiology\| PubMed ID: 21764952	2011
Monodispersed biocompatible silver sulfide nanoparticles: facile extracellular biosynthesis using the Î³-proteobacterium, Shewanella oneidensis. Acta biomaterialia\| PubMed ID: 21798382	2011
The chemotaxis-like Che1 pathway has an indirect role in adhesive cell properties of Azospirillum brasilense. FEMS microbiology letters\| PubMed ID: 22092709	2011
Enzyme reactions in nanoporous, picoliter volume containers. Analytical chemistry\| PubMed ID: 22148720	2012
Expression optimization and synthetic gene networks in cell-free systems. Nucleic acids research\| PubMed ID: 22180537	2011
Cytotoxicity induced by engineered silver nanocrystallites is dependent on surface coatings and cell types. Langmuir : the ACS journal of surfaces and colloids\| PubMed ID: 22216981	2012
Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness. Molecular plant-microbe interactions : MPMI\| PubMed ID: 22375709	2012
Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides. Journal of bacteriology\| PubMed ID: 22493196	2012
Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides. Journal of bacteriology\| PubMed ID: 23045501	2012
Relating nanomaterial properties and microbial toxicity. Nanoscale\| PubMed ID: 23203029	2013
Layer-by-layer templated assembly of silica at the nanoscale. Langmuir : the ACS journal of surfaces and colloids\| PubMed ID: 23360298	2013
Enteroaggregative Escherichia coli: surface protein dispersin increases bacterial uptake of ciprofloxacin. International journal of antimicrobial agents\| PubMed ID: 24011504	2013
Multi-input regulation and logic with T7 promoters in cells and cell-free systems. PloS one\| PubMed ID: 24194933	2013
Monodisperse alginate microgel formation in a three-dimensional microfluidic droplet generator. Biomicrofluidics\| PubMed ID: 24198865	2012
Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences. Bioinformatics (Oxford, England)\| PubMed ID: 24930142	2014
Nanostructured silicon membranes for control of molecular transport. Journal of vacuum science and technology. B, Nanotechnology & microelectronics : materials, processing, measurement, & phenomena : JVST B\| PubMed ID: 24932436	2010
Microstructured block copolymer surfaces for control of microbe adhesion and aggregation. Biosensors\| PubMed ID: 25587410	2014
New surface radiolabeling schemes of super paramagnetic iron oxide nanoparticles (SPIONs) for biodistribution studies. Nanoscale\| PubMed ID: 25790032	2015
Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment. Frontiers in microbiology\| PubMed ID: 26528266	2015
Fabrication of nanoporous membranes for tuning microbial interactions and biochemical reactions. Journal of vacuum science and technology. B, Nanotechnology & microelectronics : materials, processing, measurement, & phenomena : JVST B\| PubMed ID: 26543684	2015
Microstencils to generate defined, multi-species patterns of bacteria. Biomicrofluidics\| PubMed ID: 26594264	2015
Toward Microfluidic Reactors for Cell-Free Protein Synthesis at the Point-of-Care. Small (Weinheim an der Bergstrasse, Germany)\| PubMed ID: 26690885	2016
A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization. Frontiers in microbiology\| PubMed ID: 27148182	2016
Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development. PloS one\| PubMed ID: 27152511	2016
Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System. Frontiers in plant science\| PubMed ID: 27200001	2016
While-you-wait proteins? Producing biomolecules at the point of need. Expert review of proteomics\| PubMed ID: 27402489	2016
Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis. Applied and environmental microbiology\| PubMed ID: 27422831	2016
β-(1,3)-Glucan Unmasking in Some Candida albicans Mutants Correlates with Increases in Cell Wall Surface Roughness and Decreases in Cell Wall Elasticity. Infection and immunity\| PubMed ID: 27849179	2017
Automated Interpretation and Extraction of Topographic Information from Time of Flight Secondary Ion Mass Spectrometry Data. Scientific reports\| PubMed ID: 29213083	2017
Abiotic Stresses Shift Belowground -Associated Bacteria Toward a Core Stress Microbiome. mSystems\| PubMed ID: 29404422	2018
Nano-Enabled Approaches to Chemical Imaging in Biosystems. Annual review of analytical chemistry (Palo Alto, Calif.)\| PubMed ID: 29490189	2018
Elucidating Duramycin's Bacterial Selectivity and Mode of Action on the Bacterial Cell Envelope. Frontiers in microbiology\| PubMed ID: 29491859	2018
Exploration of the Biosynthetic Potential of the Microbiome. mSystems\| PubMed ID: 30320216	2018
Itaconic acid degradation in : the role of unexpected bioconversion pathways. Fungal biology and biotechnology\| PubMed ID: 30622724	2019
Loss of carotenoids from membranes of Pantoea sp. YR343 results in altered lipid composition and changes in membrane biophysical properties. Biochimica et biophysica acta. Biomembranes\| PubMed ID: 31095944	2019
Increasing access to microfluidics for studying fungi and other branched biological structures. Fungal biology and biotechnology\| PubMed ID: 31198578	2019
Pore-scale hydrodynamics influence the spatial evolution of bacterial biofilms in a microfluidic porous network. PloS one\| PubMed ID: 31246972	2019
Label-free time- and space-resolved exometabolite sampling of growing plant roots through nanoporous interfaces. Scientific reports\| PubMed ID: 31312009	2019
Microfluidics and Metabolomics Reveal Symbiotic Bacterial-Fungal Interactions Between and Include Metabolite Exchange. Frontiers in microbiology\| PubMed ID: 31632357	2019
Computationally Guided Discovery and Experimental Validation of Indole-3-acetic Acid Synthesis Pathways. ACS chemical biology\| PubMed ID: 31693336	2019
A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp. YR343 displays an altered membrane proteome. Scientific reports\| PubMed ID: 32917935	2020
Elucidating the potential of crude cell extracts for producing pyruvate from glucose. Synthetic biology (Oxford, England)\| PubMed ID: 32995514	2018
Targeted Growth Medium Dropouts Promote Aromatic Compound Synthesis in Crude Cell-Free Systems. ACS synthetic biology\| PubMed ID: 33044063	2020
Machine learning-based prediction of enzyme substrate scope: Application to bacterial nitrilases. Proteins\| PubMed ID: 33118210	2021
A lysate proteome engineering strategy for enhancing cell-free metabolite production. Metabolic engineering communications\| PubMed ID: 33552897	2021
Formation, characterization and modeling of emergent synthetic microbial communities. Computational and structural biotechnology journal\| PubMed ID: 33995895	2021
Advances and perspectives in discovery and functional analysis of small secreted proteins in plants. Horticulture research\| PubMed ID: 34059650	2021