Piotr E. Marszalek

Mechanical Engineering and Materials Science, Duke University

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 4	2019

Other Publications

Article	Year
The force-driven conformations of heparin studied with single molecule force microscopy. Biophysical journal\| PubMed ID: 14507732	2003
Nanomechanical control of glucopyranose rotamers. Journal of the American Chemical Society\| PubMed ID: 15149204	2004
Elastic properties of single amylose chains in water: a quantum mechanical and AFM study. Journal of the American Chemical Society\| PubMed ID: 15264836	2004
Molecular dynamics simulations of forced conformational transitions in 1,6-linked polysaccharides. Biophysical journal\| PubMed ID: 15345528	2004
Direct detection of inter-residue hydrogen bonds in polysaccharides by single-molecule force spectroscopy. Angewandte Chemie (International ed. in English)\| PubMed ID: 15786525	2005
Nanospring behaviour of ankyrin repeats. Nature\| PubMed ID: 16415852	2006
Identification of sugar isomers by single-molecule force spectroscopy. Journal of the American Chemical Society\| PubMed ID: 16637601	2006
Simulating force-induced conformational transitions in polysaccharides with the SMD replica exchange method. Biophysical journal\| PubMed ID: 16829559	2006
Direct detection of the formation of V-amylose helix by single molecule force spectroscopy. Journal of the American Chemical Society\| PubMed ID: 16848474	2006
A stochastic, cantilever approach to the evaluation of solution phase thermodynamic quantities. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 17307881	2007
Pulling geometry-induced errors in single molecule force spectroscopy measurements. Biophysical journal\| PubMed ID: 17324999	2007
Nanomechanical fingerprints of UV damage to DNA. Small (Weinheim an der Bergstrasse, Germany)\| PubMed ID: 17393552	2007
Detecting ultraviolet damage in single DNA molecules by atomic force microscopy. Biophysical journal\| PubMed ID: 17483180	2007
Direct measurements of base stacking interactions in DNA by single-molecule atomic-force spectroscopy. Physical review letters\| PubMed ID: 17678193	2007
Nanoscale detection of ionizing radiation damage to DNA by atomic force microscopy. Small (Weinheim an der Bergstrasse, Germany)\| PubMed ID: 18247386	2008
Minimizing pulling geometry errors in atomic force microscope single molecule force spectroscopy. Biophysical journal\| PubMed ID: 18641069	2008
UVA generates pyrimidine dimers in DNA directly. Biophysical journal\| PubMed ID: 19186150	2009
Detecting solvent-driven transitions of poly(A) to double-stranded conformations by atomic force microscopy. Biophysical journal\| PubMed ID: 19348773	2009
Nanomechanical fingerprints of gamma radiation damage to DNA. Journal of nanoscience and nanotechnology\| PubMed ID: 19908788	2009
Equilibrium sampling for biomolecules under mechanical tension. Biophysical journal\| PubMed ID: 20159170	2010
Mechanical unfolding of an ankyrin repeat protein. Biophysical journal\| PubMed ID: 20371329	2010
Fast and forceful refolding of stretched alpha-helical solenoid proteins. Biophysical journal\| PubMed ID: 20550922	2010
Separating DNA with different topologies by atomic force microscopy in comparison with gel electrophoresis. The journal of physical chemistry. B\| PubMed ID: 20799746	2010
Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations. The Journal of biological chemistry\| PubMed ID: 20870713	2010
Inhibitor binding increases the mechanical stability of staphylococcal nuclease. Biophysical journal\| PubMed ID: 21320455	2011
Construction of a single-axis molecular puller for measuring polysaccharide and protein mechanics by atomic force microscopy. CSH protocols\| PubMed ID: 21357001	2007
Measuring polysaccharide mechanics by atomic force microscopy. CSH protocols\| PubMed ID: 21357002	2007
Measuring protein mechanics by atomic force microscopy. CSH protocols\| PubMed ID: 21357003	2007
Atomic force microscopy captures MutS tetramers initiating DNA mismatch repair. The EMBO journal\| PubMed ID: 21666597	2011
Nanomechanics of streptavidin hubs for molecular materials. Advanced materials (Deerfield Beach, Fla.)\| PubMed ID: 22102445	2011
A nanoscale force probe for gauging intermolecular interactions. Angewandte Chemie (International ed. in English)\| PubMed ID: 22253141	2012
Stretching single polysaccharides and proteins using atomic force microscopy. Chemical Society reviews\| PubMed ID: 22331199	2012
Mechanical anisotropy of ankyrin repeats. Biophysical journal\| PubMed ID: 22404934	2012
Mutation of conserved histidines alters tertiary structure and nanomechanics of consensus ankyrin repeats. The Journal of biological chemistry\| PubMed ID: 22514283	2012
Atomic force microscopy captures folded ribosome bound nascent chains. Chemical communications (Cambridge, England)\| PubMed ID: 23051696	2012
Effects of ligand binding on the mechanical properties of ankyrin repeat protein gankyrin. PLoS computational biology\| PubMed ID: 23341763	2013
Improving single molecule force spectroscopy through automated real-time data collection and quantification of experimental conditions. Ultramicroscopy\| PubMed ID: 24001740	2014
Origin of overstretching transitions in single-stranded nucleic acids. Physical review letters\| PubMed ID: 24237568	2013
Single molecule mechanical manipulation for studying biological properties of proteins, DNA, and sugars. Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology\| PubMed ID: 24347439	2014
Unraveling the mysteries of chaperone interactions of the myosin head. Biophysical journal\| PubMed ID: 25099791	2014
Chaperones rescue luciferase folding by separating its domains. The Journal of biological chemistry\| PubMed ID: 25160632	2014
Capturing the mechanical unfolding pathway of a large protein with coiled-coil probes. Angewandte Chemie (International ed. in English)\| PubMed ID: 25339429	2014
Direct observation of multimer stabilization in the mechanical unfolding pathway of a protein undergoing oligomerization. ACS nano\| PubMed ID: 25639698	2015
Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage. Nucleic acids research\| PubMed ID: 26384421	2015
Atomic force microscopy captures the initiation of methyl-directed DNA mismatch repair. DNA repair\| PubMed ID: 26466357	2015
Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage. Nucleic acids research\| PubMed ID: 26578578	2016
Modular, Nondegenerate Polyprotein Scaffolds for Atomic Force Spectroscopy. Biomacromolecules\| PubMed ID: 27276010	2016
Single-molecule Force Spectroscopy Reveals the Calcium Dependence of the Alternative Conformations in the Native State of a βγ-Crystallin Protein. The Journal of biological chemistry\| PubMed ID: 27378818	2016
Can Dissipative Properties of Single Molecules Be Extracted from a Force Spectroscopy Experiment? Biophysical journal\| PubMed ID: 27653475	2016
A 'Semi-Protected Oligonucleotide Recombination' Assay for DNA Mismatch Repair in vivo Suggests Different Modes of Repair for Lagging Strand Mismatches. Nucleic acids research\| PubMed ID: 28053122	2017
Competing Pathways and Multiple Folding Nuclei in a Large Multidomain Protein, Luciferase. Biophysical journal\| PubMed ID: 28494954	2017
Warhammers for Peaceful Times. Biophysical journal\| PubMed ID: 29320677	2018
Relevance of the Speed and Direction of Pulling in Simple Modular Proteins. Journal of chemical theory and computation\| PubMed ID: 29771510	2018
Endonuclease-independent DNA mismatch repair processes on the lagging strand. DNA repair\| PubMed ID: 29929046	2018
AFM-Based Single-Molecule Force Spectroscopy of Proteins. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 29956225	2018
Unraveling the Mechanical Unfolding Pathways of a Multidomain Protein: Phosphoglycerate Kinase. Biophysical journal\| PubMed ID: 29972811	2018