Junmin Peng

St. Jude Proteomics Facility, St. Jude Children's Research Hospital

Affiliated withSt. Jude Children's Research Hospital St. Jude Children’s Research Hospital

Research Area

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JoVE Journal Publications

ArticleTotal : 3	Year
Publication title Cited by 15	2017
Publication title Cited by 13	2021
Publication title Cited by 19	2020

Other Publications

Article	Year
SOX4 interacts with plakoglobin in a Wnt3a-dependent manner in prostate cancer cells. BMC cell biology\| PubMed ID: 22098624	2011
Analysis of ubiquitinated proteome by quantitative mass spectrometry. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 22665315	2012
Characterizing ubiquitination sites by peptide-based immunoaffinity enrichment. Molecular & cellular proteomics : MCP\| PubMed ID: 22729469	2012
PHD3-dependent hydroxylation of HCLK2 promotes the DNA damage response. The Journal of clinical investigation\| PubMed ID: 22797300	2012
Quantitative proteomics to decipher ubiquitin signaling. Amino acids\| PubMed ID: 22821265	2012
Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis. Journal of proteome research\| PubMed ID: 22871113	2012
Ubiquitin-specific protease 9x deubiquitinates and stabilizes the spinal muscular atrophy protein-survival motor neuron. The Journal of biological chemistry\| PubMed ID: 23112048	2012
Sjogren syndrome antigen B (SSB)/La promotes global microRNA expression by binding microRNA precursors through stem-loop recognition. The Journal of biological chemistry\| PubMed ID: 23129761	2013
Regulation of behavioral circadian rhythms and clock protein PER1 by the deubiquitinating enzyme USP2. Biology open\| PubMed ID: 23213472	2012
The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis. Cell\| PubMed ID: 23332755	2013
Proteomic analysis of postsynaptic density in Alzheimer's disease. Clinica chimica acta; international journal of clinical chemistry\| PubMed ID: 23537733	2013
Structural Insights into the Functions of TBK1 in Innate Antimicrobial Immunity. Structure (London, England : 1993)\| PubMed ID: 23746807	2013
U1 small nuclear ribonucleoprotein complex and RNA splicing alterations in Alzheimer's disease. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24023061	2013
A conserved protein with AN1 zinc finger and ubiquitin-like domains modulates Cdc48 (p97) function in the ubiquitin-proteasome pathway. The Journal of biological chemistry\| PubMed ID: 24121501	2013
Identification and characterization of phosphorylation sites within the pregnane X receptor protein. Biochemical pharmacology\| PubMed ID: 24184507	2014
The U4/U6 recycling factor SART3 has histone chaperone activity and associates with USP15 to regulate H2B deubiquitination. The Journal of biological chemistry\| PubMed ID: 24526689	2014
A nano ultra-performance liquid chromatography-high resolution mass spectrometry approach for global metabolomic profiling and case study on drug-resistant multiple myeloma. Analytical chemistry\| PubMed ID: 24611431	2014
Autoregulation of the 26S proteasome by in situ ubiquitination. Molecular biology of the cell\| PubMed ID: 24743594	2014
Cell type-restricted activity of hnRNPM promotes breast cancer metastasis via regulating alternative splicing. Genes & development\| PubMed ID: 24840202	2014
Integrated approaches for analyzing U1-70K cleavage in Alzheimer's disease. Journal of proteome research\| PubMed ID: 24902715	2014
Global ubiquitination analysis by SILAC in mammalian cells. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 25059610	2014
JUMP: a tag-based database search tool for peptide identification with high sensitivity and accuracy. Molecular & cellular proteomics : MCP\| PubMed ID: 25202125	2014
Refined phosphopeptide enrichment by phosphate additive and the analysis of human brain phosphoproteome. Proteomics\| PubMed ID: 25307156	2015
Systematic optimization of long gradient chromatography mass spectrometry for deep analysis of brain proteome. Journal of proteome research\| PubMed ID: 25455107	2015
Altered ubiquitin causes perturbed calcium homeostasis, hyperactivation of calpain, dysregulated differentiation, and cataract. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 25583491	2015
Quantitative protein analysis by mass spectrometry. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 25859956	2015
Sequential Elution Interactome Analysis of the Mind Bomb 1 Ubiquitin Ligase Reveals a Novel Role in Dendritic Spine Outgrowth. Molecular & cellular proteomics : MCP\| PubMed ID: 25931508	2015
PHD2/3-dependent hydroxylation tunes cardiac response to β-adrenergic stress via phospholamban. The Journal of clinical investigation\| PubMed ID: 26075818	2015
Molecular characterization of LC3-associated phagocytosis reveals distinct roles for Rubicon, NOX2 and autophagy proteins. Nature cell biology\| PubMed ID: 26098576	2015
Efficacy of Retinoids in IKZF1-Mutated BCR-ABL1 Acute Lymphoblastic Leukemia. Cancer cell\| PubMed ID: 26321221	2015
A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival. Molecular & cellular proteomics : MCP\| PubMed ID: 26412298	2015
Multiple Weak Linear Motifs Enhance Recruitment and Processivity in SPOP-Mediated Substrate Ubiquitination. Journal of molecular biology\| PubMed ID: 26475525	2016
Joint mouse-human phenome-wide association to test gene function and disease risk. Nature communications\| PubMed ID: 26833085	2016
SUMO Pathway Modulation of Regulatory Protein Binding at the Ribosomal DNA Locus in Saccharomyces cerevisiae. Genetics\| PubMed ID: 26837752	2016
Enhanced Purification of Ubiquitinated Proteins by Engineered Tandem Hybrid Ubiquitin-binding Domains (ThUBDs). Molecular & cellular proteomics : MCP\| PubMed ID: 27037361	2016
The Noncanonical Role of ULK/ATG1 in ER-to-Golgi Trafficking Is Essential for Cellular Homeostasis. Molecular cell\| PubMed ID: 27203176	2016
JUMPg: An Integrative Proteogenomics Pipeline Identifying Unannotated Proteins in Human Brain and Cancer Cells. Journal of proteome research\| PubMed ID: 27225868	2016
C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell\| PubMed ID: 27768896	2016
The C. elegans Taste Receptor Homolog LITE-1 Is a Photoreceptor. Cell\| PubMed ID: 27863243	2016
Deep Profiling of Proteome and Phosphoproteome by Isobaric Labeling, Extensive Liquid Chromatography, and Mass Spectrometry. Methods in enzymology\| PubMed ID: 28109439	2017
Extensive Peptide Fractionation and y1 Ion-Based Interference Detection Method for Enabling Accurate Quantification by Isobaric Labeling and Mass Spectrometry. Analytical chemistry\| PubMed ID: 28194965	2017
Targeting human Mas-related G protein-coupled receptor X1 to inhibit persistent pain. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 28223516	2017
Integrative Proteomics and Phosphoproteomics Profiling Reveals Dynamic Signaling Networks and Bioenergetics Pathways Underlying T Cell Activation. Immunity\| PubMed ID: 28285833	2017
Quantitative Phosphoproteomic Analysis of Brain Tissues. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 28508362	2017
Blocking an N-terminal acetylation-dependent protein interaction inhibits an E3 ligase. Nature chemical biology\| PubMed ID: 28581483	2017
Targeting Histone Demethylases in MYC-Driven Neuroblastomas with Ciclopirox. Cancer research\| PubMed ID: 28684529	2017
The neoepitope landscape in pediatric cancers. Genome medicine\| PubMed ID: 28854978	2017
Binding of PLD2-Generated Phosphatidic Acid to KIF5B Promotes MT1-MMP Surface Trafficking and Lung Metastasis of Mouse Breast Cancer Cells. Developmental cell\| PubMed ID: 29033361	2017
Discrete roles and bifurcation of PTEN signaling and mTORC1-mediated anabolic metabolism underlie IL-7-driven B lymphopoiesis. Science advances\| PubMed ID: 29399633	2018
CDK2 inhibitors as candidate therapeutics for cisplatin- and noise-induced hearing loss. The Journal of experimental medicine\| PubMed ID: 29514916	2018
Target-Decoy-Based False Discovery Rate Estimation for Large-Scale Metabolite Identification. Journal of proteome research\| PubMed ID: 29790753	2018
Mutant LRRK2 mediates peripheral and central immune responses leading to neurodegeneration in vivo. Brain : a journal of neurology\| PubMed ID: 29800472	2018
Hippo/Mst signalling couples metabolic state and immune function of CD8α dendritic cells. Nature\| PubMed ID: 29849151	2018
Isotope Labeling-Assisted Evaluation of Hydrophilic and Hydrophobic Liquid Chromatograph-Mass Spectrometry for Metabolomics Profiling. Analytical chemistry\| PubMed ID: 29883117	2018
Quantitative phosphoproteomic analysis of the molecular substrates of sleep need. Nature\| PubMed ID: 29899451	2018
Reducing histone acetylation rescues cognitive deficits in a mouse model of Fragile X syndrome. Nature communications\| PubMed ID: 29950602	2018
Spectral Library Search Improves Assignment of TMT Labeled MS/MS Spectra. Journal of proteome research\| PubMed ID: 30096983	2018
BDNF inhibits neurodegenerative disease-associated asparaginyl endopeptidase activity via phosphorylation by AKT. JCI insight\| PubMed ID: 30135302	2018
Epidithiodiketopiperazines Inhibit Protein Degradation by Targeting Proteasome Deubiquitinase Rpn11. Cell chemical biology\| PubMed ID: 30146242	2018
Identification of Therapeutic Targets in Rhabdomyosarcoma through Integrated Genomic, Epigenomic, and Proteomic Analyses. Cancer cell\| PubMed ID: 30146332	2018
Partial loss of psychiatric risk gene Mir137 in mice causes repetitive behavior and impairs sociability and learning via increased Pde10a. Nature neuroscience\| PubMed ID: 30397325	2018
Hippo Kinases Mst1 and Mst2 Sense and Amplify IL-2R-STAT5 Signaling in Regulatory T Cells to Establish Stable Regulatory Activity. Immunity\| PubMed ID: 30413360	2018
Deep Profiling of the Aggregated Proteome in Alzheimer's Disease: From Pathology to Disease Mechanisms. Proteomes\| PubMed ID: 30424485	2018
Deubiquitylase USP9X maintains centriolar satellite integrity by stabilizing pericentriolar material 1 protein. Journal of cell science\| PubMed ID: 30584065	2019
TET2 stabilization by 14-3-3 binding to the phosphorylated Serine 99 is deregulated by mutations in cancer. Cell research\| PubMed ID: 30607016	2019
Differentiation of human pluripotent stem cells into neurons or cortical organoids requires transcriptional co-regulation by UTX and 53BP1. Nature neuroscience\| PubMed ID: 30718900	2019
Phosphatidic acid generated by PLD2 promotes the plasma membrane recruitment of IQGAP1 and neointima formation. FASEB journal : official publication of the Federation of American Societies for Experimental Biology\| PubMed ID: 30811216	2019
Mutant and Wild-Type Isocitrate Dehydrogenase 1 Share Enhancing Mechanisms Involving Distinct Tyrosine Kinase Cascades in Cancer. Cancer discovery\| PubMed ID: 30862724	2019
LKB1 orchestrates dendritic cell metabolic quiescence and anti-tumor immunity. Cell research\| PubMed ID: 30911060	2019
Metabolic switching in pluripotent stem cells reorganizes energy metabolism and subcellular organelles. Experimental cell research\| PubMed ID: 30922922	2019
Regulation of gene expression by miR-144/451 during mouse erythropoiesis. Blood\| PubMed ID: 30971389	2019
ULK1 and ULK2 Regulate Stress Granule Disassembly Through Phosphorylation and Activation of VCP/p97. Molecular cell\| PubMed ID: 30979586	2019
Identification of a Functional Non-coding Variant in the GABA Receptor α2 Subunit of the C57BL/6J Mouse Reference Genome: Major Implications for Neuroscience Research. Frontiers in genetics\| PubMed ID: 30984232	2019
Deep undepleted human serum proteome profiling toward biomarker discovery for Alzheimer's disease. Clinical proteomics\| PubMed ID: 31019427	2019
Corrigendum to "Metabolic switching in pluripotent stem cells reorganizes energy metabolism and subcellular organelles" [379 (2019) 55-64]. Experimental cell research\| PubMed ID: 31079852	2019
Kinase network dysregulation in a human induced pluripotent stem cell model of DISC1 schizophrenia. Molecular omics\| PubMed ID: 31106784	2019
Circadian gene variants and the skeletal muscle circadian clock contribute to the evolutionary divergence in longevity across populations. Genome research\| PubMed ID: 31249065	2019
Regulation of MAGE-A3/6 by the CRL4-DCAF12 ubiquitin ligase and nutrient availability. EMBO reports\| PubMed ID: 31267705	2019
Akt Phosphorylates NQO1 and Triggers its Degradation, Abolishing Its Antioxidative Activities in Parkinson's Disease. The Journal of neuroscience : the official journal of the Society for Neuroscience\| PubMed ID: 31358653	2019
ALS-FTLD-linked mutations of SQSTM1/p62 disrupt selective autophagy and NFE2L2/NRF2 anti-oxidative stress pathway. Autophagy\| PubMed ID: 31362587	2020
A Key Role for the Ubiquitin Ligase UBR4 in Myofiber Hypertrophy in Drosophila and Mice. Cell reports\| PubMed ID: 31365869	2019
Deep multiomics profiling of brain tumors identifies signaling networks downstream of cancer driver genes. Nature communications\| PubMed ID: 31420543	2019
Multimodal Imaging of Amyloid Plaques: Fusion of the Single-Probe Mass Spectrometry Image and Fluorescence Microscopy Image. Analytical chemistry\| PubMed ID: 31536324	2019
Amino Acids License Kinase mTORC1 Activity and Treg Cell Function via Small G Proteins Rag and Rheb. Immunity\| PubMed ID: 31668641	2019
Cerebrospinal fluid tau fragment correlates with tau PET: a candidate biomarker for tangle pathology. Brain : a journal of neurology\| PubMed ID: 31834365	2020
Deep Multilayer Brain Proteomics Identifies Molecular Networks in Alzheimer's Disease Progression. Neuron\| PubMed ID: 31926610	2020
An ABC Transporter Drives Medulloblastoma Pathogenesis by Regulating Sonic Hedgehog Signaling. Cancer research\| PubMed ID: 31948942	2020
A Cancer-Specific Ubiquitin Ligase Drives mRNA Alternative Polyadenylation by Ubiquitinating the mRNA 3' End Processing Complex. Molecular cell\| PubMed ID: 31980388	2020
Novel specialized cell state and spatial compartments within the germinal center. Nature immunology\| PubMed ID: 32341509	2020
27-Plex Tandem Mass Tag Mass Spectrometry for Profiling Brain Proteome in Alzheimer's Disease. Analytical chemistry\| PubMed ID: 32343560	2020
Ligand-induced monoubiquitination of BIK1 regulates plant immunity. Nature\| PubMed ID: 32404997	2020
JUMPm: A Tool for Large-Scale Identification of Metabolites in Untargeted Metabolomics. Metabolites\| PubMed ID: 32408578	2020
Control of Early B Cell Development by the RNA N-Methyladenosine Methylation. Cell reports\| PubMed ID: 32610122	2020
Toxicoproteomic Profiling of Transgenic Mice Treated with Rifampicin and Isoniazid. Cells\| PubMed ID: 32660103	2020
Integrated analysis of ultra-deep proteomes in cortex, cerebrospinal fluid and serum reveals a mitochondrial signature in Alzheimer's disease. Molecular neurodegeneration\| PubMed ID: 32711556	2020
Systems immunology: Integrating multi-omics data to infer regulatory networks and hidden drivers of immunity. Current opinion in systems biology\| PubMed ID: 32789283	2019
Combinatorial expression of GPCR isoforms affects signalling and drug responses. Nature\| PubMed ID: 33149304	2020
FBXO11-mediated proteolysis of BAHD1 relieves PRC2-dependent transcriptional repression in erythropoiesis. Blood\| PubMed ID: 33156908	2021
Deep Profiling of Microgram-Scale Proteome by Tandem Mass Tag Mass Spectrometry. Journal of proteome research\| PubMed ID: 33175545	2021
Author Correction: Combinatorial expression of GPCR isoforms affects signalling and drug responses. Nature\| PubMed ID: 33244189	2020
Antagonistic control of myofiber size and muscle protein quality control by the ubiquitin ligase UBR4 during aging. Nature communications\| PubMed ID: 33658508	2021
Integrative network analysis reveals USP7 haploinsufficiency inhibits E-protein activity in pediatric T-lineage acute lymphoblastic leukemia (T-ALL). Scientific reports\| PubMed ID: 33664368	2021
Global Profiling of Lysine Accessibility to Evaluate Protein Structure Changes in Alzheimer's Disease. Journal of the American Society for Mass Spectrometry\| PubMed ID: 33683887	2021
Quantifying Proteome and Protein Modifications in Activated T Cells by Multiplexed Isobaric Labeling Mass Spectrometry. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 33928561	2021
High-Throughput Profiling of Proteome and Posttranslational Modifications by 16-Plex TMT Labeling and Mass Spectrometry. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 33950493	2021
An age-downregulated ribosomal RpS28 protein variant regulates the muscle proteome. G3 (Bethesda, Md.)\| PubMed ID: 33974070	2021
Identification of Potent, Selective, and Orally Bioavailable Small-Molecule GSPT1/2 Degraders from a Focused Library of Cereblon Modulators. Journal of medicinal chemistry\| PubMed ID: 34042448	2021
Structural analysis of the full-length human LRRK2. Cell\| PubMed ID: 34107286	2021
Network-based systems pharmacology reveals heterogeneity in LCK and BCL2 signaling and therapeutic sensitivity of T-cell acute lymphoblastic leukemia. Nature cancer\| PubMed ID: 34151288	2021
Global Proteomic Profiling of Pediatric AML: A Pilot Study. Cancers\| PubMed ID: 34202615	2021
Proteomic landscape of Alzheimer's Disease: novel insights into pathogenesis and biomarker discovery. Molecular neurodegeneration\| PubMed ID: 34384464	2021
Acute depletion of CTCF rewires genome-wide chromatin accessibility. Genome biology\| PubMed ID: 34429148	2021
JUMPt: Comprehensive Protein Turnover Modeling of In Vivo Pulse SILAC Data by Ordinary Differential Equations. Analytical chemistry\| PubMed ID: 34587451	2021