Joseph L. DeRisi

Department of Laboratory Medicine, University of California, San Francisco

Affiliated withUniversity of California, San Francisco

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 84	2011

Other Publications

Article	Year
DNA microarrays for malaria. Trends in parasitology\| PubMed ID: 11850013	2002
Mnd1p: an evolutionarily conserved protein required for meiotic recombination. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 12011448	2002
The genome-wide expression response to telomerase deletion in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 12084816	2002
Microarray-based detection and genotyping of viral pathogens. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 12429852	2002
Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray. Genome biology\| PubMed ID: 12620119	2003
Characterization of a novel coronavirus associated with severe acute respiratory syndrome. Science (New York, N.Y.)\| PubMed ID: 12730500	2003
The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS biology\| PubMed ID: 12929205	2003
Viral discovery and sequence recovery using DNA microarrays. PLoS biology\| PubMed ID: 14624234	2003
Parallel synthesis and antimalarial screening of a 4-aminoquinoline library. Journal of combinatorial chemistry\| PubMed ID: 15132606	2004
The kinetochore is an enhancer of pericentric cohesin binding. PLoS biology\| PubMed ID: 15309047	2004
Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae. PLoS biology\| PubMed ID: 15309048	2004
Pernicious plans revealed: Plasmodium falciparum genome wide expression analysis. Current opinion in microbiology\| PubMed ID: 15358256	2004
Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 15604142	2004
Synthesis of ring-substituted 4-aminoquinolines and evaluation of their antimalarial activities. Bioorganic & medicinal chemistry letters\| PubMed ID: 15686903	2005
Genome-wide identification of genes upregulated at the onset of gametocytogenesis in Plasmodium falciparum. Molecular and biochemical parasitology\| PubMed ID: 16026866	2005
E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns. Genome biology\| PubMed ID: 16168085	2005
Parallel synthesis of 9-aminoacridines and their evaluation against chloroquine-resistant Plasmodium falciparum. Bioorganic & medicinal chemistry\| PubMed ID: 16216519	2006
Unbiased selection of localization elements reveals cis-acting determinants of mRNA bud localization in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 16326802	2005
Genome-wide mapping of DNA synthesis in Saccharomyces cerevisiae reveals that mechanisms preventing reinitiation of DNA replication are not redundant. Molecular biology of the cell\| PubMed ID: 16481397	2006
Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains. Nucleic acids research\| PubMed ID: 16493140	2006
Identification of a novel Gammaretrovirus in prostate tumors of patients homozygous for R462Q RNASEL variant. PLoS pathogens\| PubMed ID: 16609730	2006
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature\| PubMed ID: 16699522	2006
Incorporation of an intramolecular hydrogen-bonding motif in the side chain of 4-aminoquinolines enhances activity against drug-resistant P. falciparum. Journal of medicinal chemistry\| PubMed ID: 16854059	2006
Searching for new antimalarial therapeutics amongst known drugs. Chemical biology & drug design\| PubMed ID: 16882315	2006
Tetracyclines specifically target the apicoplast of the malaria parasite Plasmodium falciparum. Antimicrobial agents and chemotherapy\| PubMed ID: 16940111	2006
Microarray detection of human parainfluenzavirus 4 infection associated with respiratory failure in an immunocompetent adult. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America\| PubMed ID: 16983602	2006
Rapid DNA mapping by fluorescent single molecule detection. Nucleic acids research\| PubMed ID: 17175538	2007
An infectious retrovirus susceptible to an IFN antiviral pathway from human prostate tumors. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 17234809	2007
Cis-acting determinants of asymmetric, cytoplasmic RNA transport. RNA (New York, N.Y.)\| PubMed ID: 17449729	2007
Genome-wide diversity and selective pressure in the human rhinovirus. Virology journal\| PubMed ID: 17477878	2007
Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray. Journal of clinical microbiology\| PubMed ID: 17494722	2007
Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle. Genome biology\| PubMed ID: 17612404	2007
Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. The Journal of infectious diseases\| PubMed ID: 17703411	2007
N-terminal processing of proteins exported by malaria parasites. Molecular and biochemical parasitology\| PubMed ID: 18534695	2008
Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children. The Journal of pediatrics\| PubMed ID: 18571541	2008
Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent. Virology journal\| PubMed ID: 18671869	2008
Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 18768820	2008
Experimental malaria infection triggers early expansion of natural killer cells. Infection and immunity\| PubMed ID: 18824529	2008
The long march: a sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing. PloS one\| PubMed ID: 18941527	2008
The complete genome of klassevirus - a novel picornavirus in pediatric stool. Virology journal\| PubMed ID: 19538752	2009
Experimental induction of proventricular dilatation disease in cockatiels (Nymphicus hollandicus) inoculated with brain homogenates containing avian bornavirus 4. Virology journal\| PubMed ID: 19589169	2009
Inhibiting Plasmodium falciparum growth and heme detoxification pathway using heme-binding DNA aptamers. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 19633187	2009
Antiparasitic activities of novel, orally available fumagillin analogs. Bioorganic & medicinal chemistry letters\| PubMed ID: 19648008	2009
An enhanced single base extension technique for the analysis of complex viral populations. PloS one\| PubMed ID: 19834618	2009
Analysis of naturally occurring avian bornavirus infection and transmission during an outbreak of proventricular dilatation disease among captive psittacine birds. Journal of virology\| PubMed ID: 19955301	2010
Improved methods for magnetic purification of malaria parasites and haemozoin. Malaria journal\| PubMed ID: 20074366	2010
VersaCount: customizable manual tally software for cell counting. Source code for biology and medicine\| PubMed ID: 20180957	2010
Development of a new generation of 4-aminoquinoline antimalarial compounds using predictive pharmacokinetic and toxicology models. Journal of medicinal chemistry\| PubMed ID: 20361799	2010
Chemical genetics of Plasmodium falciparum. Nature\| PubMed ID: 20485428	2010
Human enterovirus 109: a novel interspecies recombinant enterovirus isolated from a case of acute pediatric respiratory illness in Nicaragua. Journal of virology\| PubMed ID: 20592079	2010
Avian bornavirus is present in many tissues of psittacine birds with histopathologic evidence of proventricular dilatation disease. Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc\| PubMed ID: 20622218	2010
Serological evidence of human klassevirus infection. Clinical and vaccine immunology : CVI\| PubMed ID: 20739504	2010
De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis. Nature biotechnology\| PubMed ID: 20802496	2010
HMMSplicer: a tool for efficient and sensitive discovery of known and novel splice junctions in RNA-Seq data. PloS one\| PubMed ID: 21079731	2010
Evaluation of Diarylureas for Activity Against Plasmodium falciparum. ACS medicinal chemistry letters\| PubMed ID: 21243104	2010
RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts. Nucleic acids research\| PubMed ID: 21245033	2011
NK cells and immune "memory". Journal of immunology (Baltimore, Md. : 1950)\| PubMed ID: 21289313	2011
Transcriptome sequencing demonstrates that human papillomavirus is not active in cutaneous squamous cell carcinoma. The Journal of investigative dermatology\| PubMed ID: 21490616	2011
Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, Nosema, and Crithidia. PloS one\| PubMed ID: 21687739	2011
Validation of a diagnostic microarray for human papillomavirus: coverage of 102 genotypes. Journal of nucleic acids\| PubMed ID: 21785699	2011
Synthesis and evaluation of 7-substituted 4-aminoquinoline analogues for antimalarial activity. Journal of medicinal chemistry\| PubMed ID: 21910466	2011
Chemical rescue of malaria parasites lacking an apicoplast defines organelle function in blood-stage Plasmodium falciparum. PLoS biology\| PubMed ID: 21912516	2011
Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome research\| PubMed ID: 21926179	2011
Optimization of propafenone analogues as antimalarial leads. Journal of medicinal chemistry\| PubMed ID: 21955244	2011
ReCombine: a suite of programs for detection and analysis of meiotic recombination in whole-genome datasets. PloS one\| PubMed ID: 22046241	2011
Plate-based transfection and culturing technique for genetic manipulation of Plasmodium falciparum. Malaria journal\| PubMed ID: 22257490	2012
The 3A protein from multiple picornaviruses utilizes the Golgi Adaptor Protein ACBD3 to Recruit PI4KIIIÎ² Journal of virology\| PubMed ID: 22258260	2012