Trent R. Northen

Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory

Affiliated withLawrence Berkeley National Laboratory Department of Energy

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 60	2018

Other Publications

Article	Year
A nanostructure-initiator mass spectrometry-based enzyme activity assay. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 18319341	2008
Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry. Rapid communications in mass spectrometry : RCM\| PubMed ID: 19449318	2009
Mass spectrometry based metabolomics and enzymatic assays for functional genomics. Current opinion in microbiology\| PubMed ID: 19695948	2009
Rapid screening of fatty acids using nanostructure-initiator mass spectrometry. Analytical chemistry\| PubMed ID: 20356051	2010
Dealing with the unknown: metabolomics and metabolite atlases. Journal of the American Society for Mass Spectrometry\| PubMed ID: 20452782	2010
Mass spectrometry-based metabolomics, analysis of metabolite-protein interactions, and imaging. BioTechniques\| PubMed ID: 20701590	2010
Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling. Analytical chemistry\| PubMed ID: 20945921	2010
Metabolome-proteome differentiation coupled to microbial divergence. mBio\| PubMed ID: 20978538	2010
Multivariate analysis of a 3D mass spectral image for examining tissue heterogeneity. Integrative biology : quantitative biosciences from nano to macro\| PubMed ID: 21212877	2011
Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002. Molecular bioSystems\| PubMed ID: 21935552	2011
Encoding substrates with mass tags to resolve stereospecific reactions using Nimzyme. Rapid communications in mass spectrometry : RCM\| PubMed ID: 22328213	2012
Low-dose ionizing radiation-induced blood plasma metabolic response in a diverse genetic mouse population. Radiation research\| PubMed ID: 23051006	2012
Metabolic footprinting of mutant libraries to map metabolite utilization to genotype. ACS chemical biology\| PubMed ID: 23082955	2013
Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics. mBio\| PubMed ID: 23481603	2013
Versatile synthesis of probes for high-throughput enzyme activity screening. Analytical and bioanalytical chemistry\| PubMed ID: 23568610	2013
Mass spectrometry imaging for in situ kinetic histochemistry. Scientific reports\| PubMed ID: 23584513	2013
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. The ISME journal\| PubMed ID: 23739051	2013
Robust automated mass spectra interpretation and chemical formula calculation using mixed integer linear programming. Analytical chemistry\| PubMed ID: 24032353	2013
Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics. Marine drugs\| PubMed ID: 24084783	2013
OpenMSI: a high-performance web-based platform for mass spectrometry imaging. Analytical chemistry\| PubMed ID: 24087878	2013
"Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria. Analytical chemistry\| PubMed ID: 24111681	2013
High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production. Frontiers in microbiology\| PubMed ID: 24367356	2013
Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry. ACS chemical biology\| PubMed ID: 24984213	2014
High throughput screening of enzyme activity with mass spectrometry imaging. Current opinion in biotechnology\| PubMed ID: 25129648	2015
The lethal cargo of Myxococcus xanthus outer membrane vesicles. Frontiers in microbiology\| PubMed ID: 25250022	2014
Nanostructure imaging mass spectrometry: the role of fluorocarbons in metabolite analysis and yoctomole level sensitivity. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 25361674	2015
Exometabolomics and MSI: deconstructing how cells interact to transform their small molecule environment. Current opinion in biotechnology\| PubMed ID: 25855407	2015
Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust. Frontiers in microbiology\| PubMed ID: 25926821	2015
Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee. Nature communications\| PubMed ID: 26173063	2015
Analysis of Metabolomics Datasets with High-Performance Computing and Metabolite Atlases. Metabolites\| PubMed ID: 26287255	2015
Exometabolite niche partitioning among sympatric soil bacteria. Nature communications\| PubMed ID: 26392107	2015
Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS. Frontiers in bioengineering and biotechnology\| PubMed ID: 26528471	2015
High-throughput platforms for metabolomics. Current opinion in chemical biology\| PubMed ID: 26544850	2016
Use of Nanostructure-Initiator Mass Spectrometry to Deduce Selectivity of Reaction in Glycoside Hydrolases. Frontiers in bioengineering and biotechnology\| PubMed ID: 26579511	2015
Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules. Biotechnology for biofuels\| PubMed ID: 26697109	2015
Application of Black Silicon for Nanostructure-Initiator Mass Spectrometry. Analytical chemistry\| PubMed ID: 26741735	2016
Exometabolomics Assisted Design and Validation of Synthetic Obligate Mutualism. ACS synthetic biology\| PubMed ID: 26885935	2016
Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition. Frontiers in microbiology\| PubMed ID: 27014243	2016
Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism. Frontiers in microbiology\| PubMed ID: 27148214	2016
Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges. mBio\| PubMed ID: 27178263	2016
Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis. mBio\| PubMed ID: 27555310	2016
Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses. Analytical chemistry\| PubMed ID: 27560777	2016
A robust gene-stacking method utilizing yeast assembly for plant synthetic biology. Nature communications\| PubMed ID: 27782150	2016
On-chip integration of droplet microfluidics and nanostructure-initiator mass spectrometry for enzyme screening. Lab on a chip\| PubMed ID: 27957569	2017
Extensive Turnover of Compatible Solutes in Cyanobacteria Revealed by Deuterium Oxide (DO) Stable Isotope Probing. ACS chemical biology\| PubMed ID: 28068058	2017
Dynamic substrate preferences predict metabolic properties of a simple microbial consortium. BMC bioinformatics\| PubMed ID: 28114881	2017
Determination of glycoside hydrolase specificities during hydrolysis of plant cell walls using glycome profiling. Biotechnology for biofuels\| PubMed ID: 28184246	2017
OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging. Analytical chemistry\| PubMed ID: 28467051	2017
A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism. PLoS genetics\| PubMed ID: 28467421	2017
SbCOMT (Bmr12) is involved in the biosynthesis of tricin-lignin in sorghum. PloS one\| PubMed ID: 28594846	2017
Exometabolomic Analysis of Cross-Feeding Metabolites. Metabolites\| PubMed ID: 28976938	2017
Feed Your Friends: Do Plant Exudates Shape the Root Microbiome? Trends in plant science\| PubMed ID: 29050989	2018
Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium,. mBio\| PubMed ID: 29138306	2017
Linking soil biology and chemistry in biological soil crust using isolate exometabolomics. Nature communications\| PubMed ID: 29296020	2018
Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites. Frontiers in microbiology\| PubMed ID: 29312276	2017
An integrated workflow for phenazine-modifying enzyme characterization. Journal of industrial microbiology & biotechnology\| PubMed ID: 29546662	2018
Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nature microbiology\| PubMed ID: 29556109	2018