Amanda G. Paulovich

Clinical Research Division, Fred Hutchinson Cancer Research Center - FHCRC

Affiliated withFred Hutchinson Cancer Research Center - FHCRC

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 37	2011

Other Publications

Article	Year
Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers. Analytical biochemistry\| PubMed ID: 17241609	2007
A reagent resource to identify proteins and peptides of interest for the cancer community: a workshop report. Molecular & cellular proteomics : MCP\| PubMed ID: 16867976	2006
Normalization regarding non-random missing values in high-throughput mass spectrometry data. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing\| PubMed ID: 17094249	2006
Head-to-head comparison of serum fractionation techniques. Journal of proteome research\| PubMed ID: 17269739	2007
Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer. Journal of proteome research\| PubMed ID: 17711321	2007
A human proteome detection and quantitation project. Molecular & cellular proteomics : MCP\| PubMed ID: 19131327	2009
A radiation-derived gene expression signature predicts clinical outcome for breast cancer patients. Radiation research\| PubMed ID: 19267539	2009
The evolving role of mass spectrometry in cancer biomarker discovery. Cancer biology & therapy\| PubMed ID: 19502776	2009
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nature biotechnology\| PubMed ID: 19561596	2009
Antibody-based screen for ionizing radiation-dependent changes in the Mammalian proteome for use in biodosimetry. Radiation research\| PubMed ID: 19580490	2009
Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses. Molecular & cellular proteomics : MCP\| PubMed ID: 19837981	2010
An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers. Molecular & cellular proteomics : MCP\| PubMed ID: 19843560	2010
Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance. Molecular & cellular proteomics : MCP\| PubMed ID: 19858499	2010
Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry. Journal of proteome research\| PubMed ID: 19921851	2010
Automated screening of monoclonal antibodies for SISCAPA assays using a magnetic bead processor and liquid chromatography-selected reaction monitoring-mass spectrometry. Journal of immunological methods\| PubMed ID: 19961853	2010
The Saccharomyces cerevisiae RAD9, RAD17 and RAD24 genes are required for suppression of mutagenic post-replicative repair during chronic DNA damage. DNA repair\| PubMed ID: 20472512	2010
The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline. Proteomics. Clinical applications\| PubMed ID: 20976028	2008
Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry. Analytical chemistry\| PubMed ID: 21090646	2010
Blood-Based Detection of Radiation Exposure in Humans Based on Novel Phospho-Smc1 ELISA. Radiation research\| PubMed ID: 21171809	2010
Evaluation of large scale quantitative proteomic assay development using peptide affinity-based mass spectrometry. Molecular & cellular proteomics : MCP\| PubMed ID: 21245105	2011
Blood-based detection of radiation exposure in humans based on novel phospho-Smc1 ELISA. Radiation research\| PubMed ID: 21388270	2011
Proteome and transcriptome profiles of a Her2/Neu-driven mouse model of breast cancer. Proteomics. Clinical applications\| PubMed ID: 21448875	2011
A targeted proteomics-based pipeline for verification of biomarkers in plasma. Nature biotechnology\| PubMed ID: 21685906	2011
Peptide immunoaffinity enrichment coupled with mass spectrometry for peptide and protein quantification. Clinics in laboratory medicine\| PubMed ID: 21907104	2011
Inter-laboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma. Molecular & cellular proteomics : MCP\| PubMed ID: 22199228	2011
Sequential multiplexed analyte quantification using peptide immunoaffinity enrichment coupled to mass spectrometry. Molecular & cellular proteomics : MCP\| PubMed ID: 22203691	2011