Simon Andrews

Babraham institute

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 15	2020

Other Publications

Article	Year
The PX domain: a new phosphoinositide-binding module. Journal of cell science\| PubMed ID: 11884510	2002
P-Rex2, a new guanine-nucleotide exchange factor for Rac. FEBS letters\| PubMed ID: 15304343	2004
TRP channels at a glance. Journal of cell science\| PubMed ID: 15537828	2004
Regulation of P-Rex1 by phosphatidylinositol (3,4,5)-trisphosphate and Gbetagamma subunits. The Journal of biological chemistry\| PubMed ID: 15545267	2005
P-Rex1 regulates neutrophil function. Current biology : CB\| PubMed ID: 16243035	2005
ARAP3 is essential for formation of lamellipodia after growth factor stimulation. Journal of cell science\| PubMed ID: 16418224	2006
PI(3)Kgamma has an important context-dependent role in neutrophil chemokinesis. Nature cell biology\| PubMed ID: 17173040	2007
PI3K class IB pathway. Science's STKE : signal transduction knowledge environment\| PubMed ID: 17925573	2007
PI3K class IB pathway in neutrophils. Science's STKE : signal transduction knowledge environment\| PubMed ID: 17925574	2007
P-Rex2 regulates Purkinje cell dendrite morphology and motor coordination. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 18334636	2008
Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes. PLoS genetics\| PubMed ID: 18584034	2008
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Nature genetics\| PubMed ID: 20010836	2010
Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature\| PubMed ID: 20098412	2010
Deletion of the RNA-binding proteins ZFP36L1 and ZFP36L2 leads to perturbed thymic development and T lymphoblastic leukemia. Nature immunology\| PubMed ID: 20622884	2010
Difference Tracker: ImageJ plugins for fully automated analysis of multiple axonal transport parameters. Journal of neuroscience methods\| PubMed ID: 20869987	2010
What is the advantage of a transient precursor in autophagosome biogenesis? Autophagy\| PubMed ID: 20935487	2011
PI3K signaling through the dual GTPase-activating protein ARAP3 is essential for developmental angiogenesis. Science signaling\| PubMed ID: 20978237	2010
Dynamic stage-specific changes in imprinted differentially methylated regions during early mammalian development and prevalence of non-CpG methylation in oocytes. Development (Cambridge, England)\| PubMed ID: 21247965	2011
Large scale loss of data in low-diversity illumina sequencing libraries can be recovered by deferred cluster calling. PloS one\| PubMed ID: 21305042	2011
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation. Nature\| PubMed ID: 21460836	2011
Age-dependent axonal transport and locomotor changes and tau hypophosphorylation in a "P301L" tau knockin mouse. Neurobiology of aging\| PubMed ID: 21492964	2012
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics (Oxford, England)\| PubMed ID: 21493656	2011
Dynamic CpG island methylation landscape in oocytes and preimplantation embryos. Nature genetics\| PubMed ID: 21706000	2011
High-throughput analysis of calcium signalling kinetics in astrocytes stimulated with different neurotransmitters. PloS one\| PubMed ID: 22046396	2011
DNA methylome analysis using short bisulfite sequencing data. Nature methods\| PubMed ID: 22290186	2012
An unbiased assessment of the role of imprinted genes in an intergenerational model of developmental programming. PLoS genetics\| PubMed ID: 22511876	2012
DNA methylation profiles define stem cell identity and reveal a tight embryonic-extraembryonic lineage boundary. Stem cells (Dayton, Ohio)\| PubMed ID: 23034951	2012
Mutual antagonism between IP(3)RII and miRNA-133a regulates calcium signals and cardiac hypertrophy. The Journal of cell biology\| PubMed ID: 23166348	2012
The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells. Molecular cell\| PubMed ID: 23219530	2012
Deficiency in spliceosome-associated factor CTNNBL1 does not affect ongoing cell cycling but delays exit from quiescence and results in embryonic lethality in mice. Cell cycle (Georgetown, Tex.)\| PubMed ID: 23343763	2013
FGF Signaling Inhibition in ESCs Drives Rapid Genome-wide Demethylation to the Epigenetic Ground State of Pluripotency. Cell stem cell\| PubMed ID: 23850245	2013
A screen for hydroxymethylcytosine and formylcytosine binding proteins suggests functions in transcription and chromatin regulation. Genome biology\| PubMed ID: 24156278	2013
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity. Nature methods\| PubMed ID: 25042786	2014
Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C. Genome research\| PubMed ID: 25122612	2014
The miR-155-PU.1 axis acts on Pax5 to enable efficient terminal B cell differentiation. The Journal of experimental medicine\| PubMed ID: 25288398	2014
Epigenetic memory of the first cell fate decision prevents complete ES cell reprogramming into trophoblast. Nature communications\| PubMed ID: 25423963	2014
Global reorganization of the nuclear landscape in senescent cells. Cell reports\| PubMed ID: 25640177	2015
The RNA-binding protein HuR is essential for the B cell antibody response. Nature immunology\| PubMed ID: 25706746	2015
The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements. Genome research\| PubMed ID: 25752748	2015
Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C. Nature genetics\| PubMed ID: 25938943	2015
Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome. Nature genetics\| PubMed ID: 26323060	2015
ACF chromatin-remodeling complex mediates stress-induced depressive-like behavior. Nature medicine\| PubMed ID: 26390241	2015
Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape. Genome biology\| PubMed ID: 26408185	2015
Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 26483466	2015
Localizing the lipid products of PI3Kγ in neutrophils. Advances in biological regulation\| PubMed ID: 26596865	2016
Erratum to: Deep sequencing and de novo assembly of the mouse occyte transcriptome define the contribution of transcription to the DNA methylation landscape. Genome biology\| PubMed ID: 26635312	2015
Ageing is associated with molecular signatures of inflammation and type 2 diabetes in rat pancreatic islets. Diabetologia\| PubMed ID: 26699651	2016
Pervasive polymorphic imprinted methylation in the human placenta. Genome research\| PubMed ID: 26769960	2016
HiCUP: pipeline for mapping and processing Hi-C data. F1000Research\| PubMed ID: 26835000	2015
RNA-binding proteins ZFP36L1 and ZFP36L2 promote cell quiescence. Science (New York, N.Y.)\| PubMed ID: 27102483	2016
Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination. Cell reports\| PubMed ID: 27264181	2016
SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes. F1000Research\| PubMed ID: 27429743	2016
MYC activation and BCL2L11 silencing by a tumour virus through the large-scale reconfiguration of enhancer-promoter hubs. eLife\| PubMed ID: 27490482	2016
Comparative Principles of DNA Methylation Reprogramming during Human and Mouse In Vitro Primordial Germ Cell Specification. Developmental cell\| PubMed ID: 27728778	2016
Deletion of the Polycomb-Group Protein EZH2 Leads to Compromised Self-Renewal and Differentiation Defects in Human Embryonic Stem Cells. Cell reports\| PubMed ID: 27926872	2016
DNA methylation and gene expression changes derived from assisted reproductive technologies can be decreased by reproductive fluids. eLife\| PubMed ID: 28134613	2017
Gender Differences in Global but Not Targeted Demethylation in iPSC Reprogramming. Cell reports\| PubMed ID: 28147265	2017
Cluster Flow: A user-friendly bioinformatics workflow tool. F1000Research\| PubMed ID: 28299179	2016
Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism. Genome biology\| PubMed ID: 28351387	2017
Transcription and chromatin determinants of de novo DNA methylation timing in oocytes. Epigenetics & chromatin\| PubMed ID: 28507606	2017
An endosiRNA-Based Repression Mechanism Counteracts Transposon Activation during Global DNA Demethylation in Embryonic Stem Cells. Cell stem cell\| PubMed ID: 29100015	2017
Local Chromatin Features Including PU.1 and IKAROS Binding and H3K4 Methylation Shape the Repertoire of Immunoglobulin Kappa Genes Chosen for V(D)J Recombination. Frontiers in immunology\| PubMed ID: 29204143	2017
MLL2 conveys transcription-independent H3K4 trimethylation in oocytes. Nature structural & molecular biology\| PubMed ID: 29323282	2018
Capture Hi-C identifies putative target genes at 33 breast cancer risk loci. Nature communications\| PubMed ID: 29531215	2018
Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data. Genome biology\| PubMed ID: 29544553	2018
TDP-43 gains function due to perturbed autoregulation in a Tardbp knock-in mouse model of ALS-FTD. Nature neuroscience\| PubMed ID: 29556029	2018
Unbiased quantification of immunoglobulin diversity at the DNA level with VDJ-seq. Nature protocols\| PubMed ID: 29725123	2018
Publisher Correction: TDP-43 gains function due to perturbed autoregulation in a Tardbp knock-in mouse model of ALS-FTD. Nature neuroscience\| PubMed ID: 29872124	2018
FastQ Screen: A tool for multi-genome mapping and quality control. F1000Research\| PubMed ID: 30254741	2018
Correction to: Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data. Genome biology\| PubMed ID: 30795792	2019
MicroRNA-155 is essential for the optimal proliferation and survival of plasmablast B cells. Life science alliance\| PubMed ID: 31097471	2019
RNA proximity sequencing reveals the spatial organization of the transcriptome in the nucleus. Nature biotechnology\| PubMed ID: 31267103	2019
Ageing affects DNA methylation drift and transcriptional cell-to-cell variability in mouse muscle stem cells. Nature communications\| PubMed ID: 31554804	2019
Endogenous retroviral insertions drive non-canonical imprinting in extra-embryonic tissues. Genome biology\| PubMed ID: 31665063	2019
BNC1 regulates cell heterogeneity in human pluripotent stem cell-derived epicardium. Development (Cambridge, England)\| PubMed ID: 31767620	2019
A KHDC3L mutation resulting in recurrent hydatidiform mole causes genome-wide DNA methylation loss in oocytes and persistent imprinting defects post-fertilisation. Genome medicine\| PubMed ID: 31847873	2019
RNA proximity sequencing data and analysis pipeline from a human neuroblastoma nuclear transcriptome. Scientific data\| PubMed ID: 31992717	2020
Low rates of mutation in clinical grade human pluripotent stem cells under different culture conditions. Nature communications\| PubMed ID: 32251294	2020
DNA methylation changes during preimplantation development reveal inter-species differences and reprogramming events at imprinted genes. Clinical epigenetics\| PubMed ID: 32393379	2020