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High-Throughput Quantitative RT-PCR in Single and Bulk C. elegans Samples Using Nanofluidic Technology
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Genetics
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JoVE Journal Genetics
High-Throughput Quantitative RT-PCR in Single and Bulk C. elegans Samples Using Nanofluidic Technology

High-Throughput Quantitative RT-PCR in Single and Bulk C. elegans Samples Using Nanofluidic Technology

DOI:
10.3791/61132-v

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08:19 min

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May 28, 2020

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, , , , , , ,
1Babraham Institute, 2Gurdon Institute,University of Cambridge, 3Department of Genetics,University of Cambridge, 4Wellcome Trust Genome Campus,Wellcome Trust Sanger Institute, 5Laboratory of Virology and Infectious Disease,The Rockefeller University

Chapters

  • 00:05Introduction
  • 00:46Worm-to-CT Worm Lysis
  • 02:08Reverse Transcription (RT) for Bulk Samples
  • 02:38Target Specific Preamplification
  • 03:19Exonuclease I Treatment
  • 03:53Sample Mix Preparation
  • 04:48Nanofluidic Chip Priming and Loading
  • 06:00Results: Representative Worm-to-CT Analysis
  • 07:45Conclusion

Summary

Automatic Translation

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In this article a high-throughput protocol for fast and reliable determination of gene expression levels in single or bulk C. elegans samples is described. This protocol does not require RNA isolation and produces cDNA directly from samples. It can be used together with high-throughput multiplexed nanofluidic real-time qPCR platforms.

Tags

Keywords: RT-qPCRC. ElegansNanofluidic TechnologyHigh-throughputSingle-sampleBulk-sampleRNA IsolationLysis BufferReverse TranscriptionPre-amplificationGene ExpressionInterindividual Variability

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