Maria Carmo-Fonseca

Instituto de Medicina Molecular João Lobo Antunes, Universidade de Lisboa

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 40	2020

Other Publications

Article	Year
Chromosomal G-dark bands determine the spatial organization of centromeric heterochromatin in the nucleus. Molecular biology of the cell\| PubMed ID: 11694589	2001
The intranuclear mobility of messenger RNA binding proteins is ATP dependent and temperature sensitive. The Journal of cell biology\| PubMed ID: 12473688	2002
SUMO-1 modification alters ADAR1 editing activity. Molecular biology of the cell\| PubMed ID: 16120648	2005
Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion. Genome research\| PubMed ID: 16344558	2006
Abundance of the largest subunit of RNA polymerase II in the nucleus is regulated by nucleo-cytoplasmic shuttling. Experimental cell research\| PubMed ID: 16765347	2006
RNA interference knockdown of hU2AF35 impairs cell cycle progression and modulates alternative splicing of Cdc25 transcripts. Molecular biology of the cell\| PubMed ID: 16855028	2006
In vivo requirement of the small subunit of U2AF for recognition of a weak 3' splice site. Molecular and cellular biology\| PubMed ID: 16940179	2006
Diversity of human U2AF splicing factors. The FEBS journal\| PubMed ID: 17042780	2006
Genome-wide identification of functionally distinct subsets of cellular mRNAs associated with two nucleocytoplasmic-shuttling mammalian splicing factors. Genome biology\| PubMed ID: 17137510	2006
A reaction-diffusion model to study RNA motion by quantitative fluorescence recovery after photobleaching. Biophysical journal\| PubMed ID: 17259280	2007
Depletion of the yeast nuclear exosome subunit Rrp6 results in accumulation of polyadenylated RNAs in a discrete domain within the nucleolus. Molecular and cellular biology\| PubMed ID: 17403903	2007
Splicing- and cleavage-independent requirement of RNA polymerase II CTD for mRNA release from the transcription site. The Journal of cell biology\| PubMed ID: 17938247	2007
A stochastic view of spliceosome assembly and recycling in the nucleus. PLoS computational biology\| PubMed ID: 17967051	2007
How genes find their way inside the cell nucleus. The Journal of cell biology\| PubMed ID: 18070916	2007
Inactivation of cleavage factor I components Rna14p and Rna15p induces sequestration of small nucleolar ribonucleoproteins at discrete sites in the nucleus. Molecular biology of the cell\| PubMed ID: 18234838	2008
Splicing factors SF1 and U2AF associate in extraspliceosomal complexes. Molecular and cellular biology\| PubMed ID: 18285458	2008
Nuclear organization and splicing control. Advances in experimental medicine and biology\| PubMed ID: 18380337	2007
The CTD role in cotranscriptional RNA processing and surveillance. FEBS letters\| PubMed ID: 18435923	2008
Tissue-specific splicing factor gene expression signatures. Nucleic acids research\| PubMed ID: 18653532	2008
The emerging role of splicing factors in cancer. EMBO reports\| PubMed ID: 18846105	2008
Frontiers in fluorescence microscopy. The International journal of developmental biology\| PubMed ID: 19247949	2009
The spliceosome: a self-organized macromolecular machine in the nucleus? Trends in cell biology\| PubMed ID: 19616950	2009
Hsp70 chaperones and type I PRMTs are sequestered at intranuclear inclusions caused by polyalanine expansions in PABPN1. PloS one\| PubMed ID: 19641605	2009
Unconstrained mining of transcript data reveals increased alternative splicing complexity in the human transcriptome. Nucleic acids research\| PubMed ID: 20385588	2010
Orphan nuclear bodies. Cold Spring Harbor perspectives in biology\| PubMed ID: 20610547	2010
Follow that messenger: live-imaging a journey out of the nucleus. Developmental cell\| PubMed ID: 20627070	2010
A link between nuclear RNA surveillance, the human exosome and RNA polymerase II transcriptional termination. Nucleic acids research\| PubMed ID: 20699273	2010
RNA seeds nuclear bodies. Nature cell biology\| PubMed ID: 21283118	2011
Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36. Nature structural & molecular biology\| PubMed ID: 21792193	2011
Spliceosome assembly is coupled to RNA polymerase II dynamics at the 3' end of human genes. Nature structural & molecular biology\| PubMed ID: 21892168	2011
Cotranscriptional RNA checkpoints. Epigenomics\| PubMed ID: 22121903	2010
Design principles of interconnections between chromatin and pre-mRNA splicing. Trends in biochemical sciences\| PubMed ID: 22398209	2012
Dynamic transitions in RNA polymerase II density profiles during transcription termination. Genome research\| PubMed ID: 22684278	2012
Alternative splicing and cancer. Journal of nucleic acids\| PubMed ID: 22685632	2012
Histone methyltransferase SETD2 coordinates FACT recruitment with nucleosome dynamics during transcription. Nucleic acids research\| PubMed ID: 23325844	2013
Imaging dynamic interactions between spliceosomal proteins and pre-mRNA in living cells. Methods (San Diego, Calif.)\| PubMed ID: 23969316	2014
Live-cell visualization of pre-mRNA splicing with single-molecule sensitivity. Cell reports\| PubMed ID: 24035393	2013
Reciprocal regulatory links between cotranscriptional splicing and chromatin. Seminars in cell & developmental biology\| PubMed ID: 24657193	2014
Trypanosoma brucei histone H1 inhibits RNA polymerase I transcription and is important for parasite fitness in vivo. Molecular microbiology\| PubMed ID: 24946224	2014
Transcription-coupled RNA surveillance in human genetic diseases caused by splice site mutations. Human molecular genetics\| PubMed ID: 25652404	2015
RNA imaging: seeing is believing. RNA (New York, N.Y.)\| PubMed ID: 25780147	2015
Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing. Cell\| PubMed ID: 25910207	2015
Single-Molecule Imaging of RNA Splicing in Live Cells. Methods in enzymology\| PubMed ID: 26068754	2015
Single-Molecule Live-Cell Visualization of Pre-mRNA Splicing. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 26463395	2016
Assembly of the nucleolus: in need of revision. The EMBO journal\| PubMed ID: 26471727	2015
Mammalian NET-seq analysis defines nascent RNA profiles and associated RNA processing genome-wide. Nature protocols\| PubMed ID: 26844429	2016
STaQTool: Spot tracking and quantification tool for monitoring splicing of single pre-mRNA molecules in living cells. Methods (San Diego, Calif.)\| PubMed ID: 26855377	2016
Co-transcriptional splicing and the CTD code. Critical reviews in biochemistry and molecular biology\| PubMed ID: 27622638	2016
A rare missense variant in RET exon 8 in a Portuguese family with atypical multiple endocrine neoplasia type 2A. Hormones (Athens, Greece)\| PubMed ID: 27838608	2016
Distinctive Patterns of Transcription and RNA Processing for Human lincRNAs. Molecular cell\| PubMed ID: 28017589	2017
Transcription Dynamics Prevent RNA-Mediated Genomic Instability through SRPK2-Dependent DDX23 Phosphorylation. Cell reports\| PubMed ID: 28076779	2017
Pharmacological inhibition of the spliceosome subunit SF3b triggers exon junction complex-independent nonsense-mediated decay. Journal of cell science\| PubMed ID: 28302904	2017
Quantitative Image Analysis of Single-Molecule mRNA Dynamics in Living Cells. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 28324612	2017
Deep intronic mutations and human disease. Human genetics\| PubMed ID: 28497172	2017
Short (16-mer) locked nucleic acid splice-switching oligonucleotides restore dystrophin production in Duchenne Muscular Dystrophy myotubes. PloS one\| PubMed ID: 28742140	2017
Whole gene sequencing identifies deep-intronic variants with potential functional impact in patients with hypertrophic cardiomyopathy. PloS one\| PubMed ID: 28797094	2017
Silencing of the lncRNA Zeb2-NAT facilitates reprogramming of aged fibroblasts and safeguards stem cell pluripotency. Nature communications\| PubMed ID: 29311544	2018
RNA Polymerase II Phosphorylated on CTD Serine 5 Interacts with the Spliceosome during Co-transcriptional Splicing. Molecular cell\| PubMed ID: 30340024	2018
Design Principles for Pluripotent Stem Cell-Derived Organoid Engineering. Stem cells international\| PubMed ID: 31149014	2019
Negative MR chronic myeloid leukaemia and its possible implications for treatment-free remission. British journal of haematology\| PubMed ID: 31218669	2019
Analysis of Mammalian Native Elongating Transcript sequencing (mNET-seq) high-throughput data. Methods (San Diego, Calif.)\| PubMed ID: 31493517	2019
Targeting mRNA processing as an anticancer strategy. Nature reviews. Drug discovery\| PubMed ID: 31554928	2020
Detection of rare and novel EGFR mutations in NSCLC patients: Implications for treatment-decision. Lung cancer (Amsterdam, Netherlands)\| PubMed ID: 31715539	2020
RNA Splicing Defects in Hypertrophic Cardiomyopathy: Implications for Diagnosis and Therapy. International journal of molecular sciences\| PubMed ID: 32079122	2020
Maturation of Human Pluripotent Stem Cell-Derived Cerebellar Neurons in the Absence of Co-culture. Frontiers in bioengineering and biotechnology\| PubMed ID: 32117945	2020
Cryptic Splice-altering Variants in MYBPC3 Are a Prevalent Cause of Hypertrophic Cardiomyopathy. Circulation. Genomic and precision medicine\| PubMed ID: 32396390	2020
A Year in the Life of the EU-CardioRNA COST Action: CA17129 Catalysing Transcriptomics Research in Cardiovascular Disease. Non-coding RNA\| PubMed ID: 32443579	2020