James A. Thomson

James A. Thomson

Regenerative Biology, Morgridge Institute for Research

Affiliated withMorgridge Institute for ResearchUniversity of WisconsinUniversity of California

+1

Research Area

Biology

Biography

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JoVE Journal Publications

ArticleTotal : 1
Year
Single Read and Paired End mRNA-Seq Illumina Libraries from 10 Nanograms Total RNA
Publication title

Cited by 30

2011

Other Publications

Article
Year
On-Line Updating of Spatial Information Druing Locomotion Without Vision.

Journal of motor behavior| PubMed ID: 11177618

1999
Efficient method for expressing transgenes in nonhuman primate embryos using a stable episomal vector.

Molecular reproduction and development| PubMed ID: 11933162

2002
Surface antigens of human embryonic stem cells: changes upon differentiation in culture.

Journal of anatomy| PubMed ID: 12033729

2002
BMP4 initiates human embryonic stem cell differentiation to trophoblast.

Nature biotechnology| PubMed ID: 12426580

2002
High-level sustained transgene expression in human embryonic stem cells using lentiviral vectors.

Stem cells (Dayton, Ohio)| PubMed ID: 12529558

2003
Homologous recombination in human embryonic stem cells.

Nature biotechnology| PubMed ID: 12577066

2003
Human embryonic stem cells develop into multiple types of cardiac myocytes: action potential characterization.

Circulation research| PubMed ID: 12791707

2003
Crystallographic identification of a noncompetitive inhibitor binding site on the hepatitis C virus NS5B RNA polymerase enzyme.

Journal of virology| PubMed ID: 12805457

2003
Functional endothelial cells derived from rhesus monkey embryonic stem cells.

Blood| PubMed ID: 14563647

2004
Gene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 14595015

2003
Recurrent gain of chromosomes 17q and 12 in cultured human embryonic stem cells.

Nature biotechnology| PubMed ID: 14661028

2004
Trophoblast differentiation in embryoid bodies derived from human embryonic stem cells.

Endocrinology| PubMed ID: 14684604

2004
Arrays for the combinatorial exploration of cell adhesion.

Journal of the American Chemical Society| PubMed ID: 15339142

2004
Crystal structure of human ABAD/HSD10 with a bound inhibitor: implications for design of Alzheimer's disease therapeutics.

Journal of molecular biology| PubMed ID: 15342248

2004
Human embryonic stem cell-derived CD34+ cells: efficient production in the coculture with OP9 stromal cells and analysis of lymphohematopoietic potential.

Blood| PubMed ID: 15374881

2005
A germ cell origin of embryonic stem cells?

Development (Cambridge, England)| PubMed ID: 15623802

2005
Differentiation of human embryonic stem cells occurs through symmetric cell division.

Stem cells (Dayton, Ohio)| PubMed ID: 15671139

2005
Basic FGF and suppression of BMP signaling sustain undifferentiated proliferation of human ES cells.

Nature methods| PubMed ID: 15782187

2005
Directed differentiation of dopaminergic neuronal subtypes from human embryonic stem cells.

Stem cells (Dayton, Ohio)| PubMed ID: 15917474

2005
The effects of adult guidance and peer discussion on the development of children's representations: evidence from the training of pedestrian skills.

British journal of psychology (London, England : 1953)| PubMed ID: 15969830

2005
Human ERas gene has an upstream premature polyadenylation signal that results in a truncated, noncoding transcript.

Stem cells (Dayton, Ohio)| PubMed ID: 16081664

2005
Human embryonic stem cells reprogram myeloid precursors following cell-cell fusion.

Stem cells (Dayton, Ohio)| PubMed ID: 16210403

2006
Influence of virtual reality training on the roadside crossing judgments of child pedestrians.

Journal of experimental psychology. Applied| PubMed ID: 16221036

2005
Human embryonic stem cell-derived hematopoietic cells are capable of engrafting primary as well as secondary fetal sheep recipients.

Blood| PubMed ID: 16278307

2006
Basic fibroblast growth factor support of human embryonic stem cell self-renewal.

Stem cells (Dayton, Ohio)| PubMed ID: 16282444

2006
Derivation of human embryonic stem cells in defined conditions.

Nature biotechnology| PubMed ID: 16388305

2006
Directed differentiation of human embryonic stem cells into functional dendritic cells through the myeloid pathway.

Journal of immunology (Baltimore, Md. : 1950)| PubMed ID: 16493050

2006
Leukosialin (CD43) defines hematopoietic progenitors in human embryonic stem cell differentiation cultures.

Blood| PubMed ID: 16757688

2006
Feeder-independent culture of human embryonic stem cells.

Nature methods| PubMed ID: 16862139

2006
A severe de novo methylation of episomal vectors by human ES cells.

Biochemical and biophysical research communications| PubMed ID: 16973130

2006
Microarray analysis of stem cells and differentiation.

Methods in enzymology| PubMed ID: 17161699

2006
Nanog and transcriptional networks in embryonic stem cell pluripotency.

Cell research| PubMed ID: 17211451

2007
Differential requirements for hematopoietic commitment between human and rhesus embryonic stem cells.

Stem cells (Dayton, Ohio)| PubMed ID: 17284653

2007
Defined substrates for human embryonic stem cell growth identified from surface arrays.

ACS chemical biology| PubMed ID: 17480050

2007
LongSAGE profiling of nine human embryonic stem cell lines.

Genome biology| PubMed ID: 17570852

2007
A microarray analysis of the emergence of embryonic definitive hematopoiesis.

Experimental hematology| PubMed ID: 17761287

2007
Induced pluripotent stem cell lines derived from human somatic cells.

Science (New York, N.Y.)| PubMed ID: 18029452

2007
Conserved regulation of MAP kinase expression by PUF RNA-binding proteins.

PLoS genetics| PubMed ID: 18166083

2007
Steady-state and pre-steady-state kinetic evaluation of severe acute respiratory syndrome coronavirus (SARS-CoV) 3CLpro cysteine protease: development of an ion-pair model for catalysis.

Biochemistry| PubMed ID: 18237196

2008
Dielectrophoretic separation of platelets from diluted whole blood in microfluidic channels.

Electrophoresis| PubMed ID: 18288670

2008
Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 18326628

2008
Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells.

Cell stem cell| PubMed ID: 18371364

2007
A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets.

Nucleic acids research| PubMed ID: 18385155

2008
Caspase activity mediates the differentiation of embryonic stem cells.

Cell stem cell| PubMed ID: 18522852

2008
Ronin is essential for embryogenesis and the pluripotency of mouse embryonic stem cells.

Cell| PubMed ID: 18585351

2008
Optical mapping discerns genome wide DNA methylation profiles.

BMC molecular biology| PubMed ID: 18667073

2008
Pluripotent stem cell lines.

Genes & development| PubMed ID: 18676805

2008
NANOG is a direct target of TGFbeta/activin-mediated SMAD signaling in human ESCs.

Cell stem cell| PubMed ID: 18682241

2008
Cell type-specific DNA methylation patterns in the human breast.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 18780791

2008
Defined, feeder-independent medium for human embryonic stem cell culture.

Current protocols in stem cell biology| PubMed ID: 18785163

2007
Secreted proteoglycans directly mediate human embryonic stem cell-basic fibroblast growth factor 2 interactions critical for proliferation.

Stem cells (Dayton, Ohio)| PubMed ID: 18802039

2008
Induced pluripotent stem cells from a spinal muscular atrophy patient.

Nature| PubMed ID: 19098894

2009
Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 19144917

2009
Functional cardiomyocytes derived from human induced pluripotent stem cells.

Circulation research| PubMed ID: 19213953

2009
Histone modifications at human enhancers reflect global cell-type-specific gene expression.

Nature| PubMed ID: 19295514

2009
Human induced pluripotent stem cells free of vector and transgene sequences.

Science (New York, N.Y.)| PubMed ID: 19325077

2009
ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches.

Bioinformatics (Oxford, England)| PubMed ID: 19351619

2009
MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells.

Cell| PubMed ID: 19409607

2009
MicroRNA 92b controls the G1/S checkpoint gene p57 in human embryonic stem cells.

Stem cells (Dayton, Ohio)| PubMed ID: 19544458

2009
Human DNA methylomes at base resolution show widespread epigenomic differences.

Nature| PubMed ID: 19829295

2009
The microwell control of embryoid body size in order to regulate cardiac differentiation of human embryonic stem cells.

Biomaterials| PubMed ID: 19945747

2010
RNA-Seq gene expression estimation with read mapping uncertainty.

Bioinformatics (Oxford, England)| PubMed ID: 20022975

2010
Neural differentiation of human induced pluripotent stem cells follows developmental principles but with variable potency.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 20160098

2010
No evidence for clonal selection due to lentiviral integration sites in human induced pluripotent stem cells.

Stem cells (Dayton, Ohio)| PubMed ID: 20166152

2010
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

Cell stem cell| PubMed ID: 20452322

2010
Actin-myosin contractility is responsible for the reduced viability of dissociated human embryonic stem cells.

Cell stem cell| PubMed ID: 20682449

2010
Quantitative selection of DNA aptamers through microfluidic selection and high-throughput sequencing.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 20705898

2010
The social cognitive determinants of offending drivers' speeding behaviour.

Accident; analysis and prevention| PubMed ID: 20728608

2010
The NIH Roadmap Epigenomics Mapping Consortium.

Nature biotechnology| PubMed ID: 20944595

2010
A mesoderm-derived precursor for mesenchymal stem and endothelial cells.

Cell stem cell| PubMed ID: 21112566

2010
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells.

Nature| PubMed ID: 21289626

2011
Efficient generation of transgene-free induced pluripotent stem cells from normal and neoplastic bone marrow and cord blood mononuclear cells.

Blood| PubMed ID: 21296996

2011
FGF2 sustains NANOG and switches the outcome of BMP4-induced human embryonic stem cell differentiation.

Cell stem cell| PubMed ID: 21362572

2011
Somatic coding mutations in human induced pluripotent stem cells.

Nature| PubMed ID: 21368825

2011
Generation of red blood cells from human induced pluripotent stem cells.

Stem cells and development| PubMed ID: 21434814

2011
Genetic correction and analysis of induced pluripotent stem cells from a patient with gyrate atrophy.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 21464322

2011
Chemically defined conditions for human iPSC derivation and culture.

Nature methods| PubMed ID: 21478862

2011
TF-Cluster: a pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM).

BMC systems biology| PubMed ID: 21496241

2011
Optic vesicle-like structures derived from human pluripotent stem cells facilitate a customized approach to retinal disease treatment.

Stem cells (Dayton, Ohio)| PubMed ID: 21678528

2011
Human lymphoblastoid B-cell lines reprogrammed to EBV-free induced pluripotent stem cells.

Blood| PubMed ID: 21708888

2011
Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency.

Cell research| PubMed ID: 21876557

2011
High purity human-induced pluripotent stem cell-derived cardiomyocytes: electrophysiological properties of action potentials and ionic currents.

American journal of physiology. Heart and circulatory physiology| PubMed ID: 21890694

2011
Proteomic and phosphoproteomic comparison of human ES and iPS cells.

Nature methods| PubMed ID: 21983960

2011
Proteomics and pluripotency.

Critical reviews in biochemistry and molecular biology| PubMed ID: 21999516

2011
Protein kinase C mediated extraembryonic endoderm differentiation of human embryonic stem cells.

Stem cells (Dayton, Ohio)| PubMed ID: 22213079

2012
Thermal Stability of FGF Protein is a Determinant Factor in Regulating Self-Renewal, Differentiation and Reprogramming in Human Pluripotent Stem Cells.

Stem cells (Dayton, Ohio)| PubMed ID: 22213113

2011