Xuerui Yang

MOE Key Laboratory of Bioinformatics, Tsinghua University

Affiliated withTsinghua University Joint Graduate Program of Peking-Tsinghua-National Institute of Biological Science

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 2	2022

Other Publications

Article	Year
Double stranded RNA-dependent protein kinase promotes the tumorigenic phenotype in HepG2 hepatocellular carcinoma cells by activating STAT3. Oncology letters\| PubMed ID: 25360179	2014
Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks. Genome research\| PubMed ID: 25378249	2015
Genome-wide assessment of differential translations with ribosome profiling data. Nature communications\| PubMed ID: 27041671	2016
CryoEM structure of yeast cytoplasmic exosome complex. Cell research\| PubMed ID: 27174052	2016
Precision Medicine: What Challenges Are We Facing? Genomics, proteomics & bioinformatics\| PubMed ID: 27744061	2016
High-throughput validation of ceRNA regulatory networks. BMC genomics\| PubMed ID: 28558729	2017
Germinal-center development of memory B cells driven by IL-9 from follicular helper T cells. Nature immunology\| PubMed ID: 28650481	2017
The R-loop is a common chromatin feature of the Arabidopsis genome. Nature plants\| PubMed ID: 28848233	2017
Mettl3-/Mettl14-mediated mRNA N-methyladenosine modulates murine spermatogenesis. Cell research\| PubMed ID: 28914256	2017
Ribosome Profiling Reveals Genome-wide Cellular Translational Regulation upon Heat Stress in Escherichia coli. Genomics, proteomics & bioinformatics\| PubMed ID: 29031842	2017
De novo annotation and characterization of the translatome with ribosome profiling data. Nucleic acids research\| PubMed ID: 29538776	2018
The number of titrated microRNA species dictates ceRNA regulation. Nucleic acids research\| PubMed ID: 29684207	2018
Oncogenic Properties of NEAT1 in Prostate Cancer Cells Depend on the CDC5L-AGRN Transcriptional Regulation Circuit. Cancer research\| PubMed ID: 29871935	2018
Insights from multidimensional analyses of the pan-cancer DNA methylome heterogeneity and the uncanonical CpG-gene associations. International journal of cancer\| PubMed ID: 30121964	2018
Function of HNRNPC in breast cancer cells by controlling the dsRNA-induced interferon response. The EMBO journal\| PubMed ID: 30158112	2018
Cideb controls sterol-regulated ER export of SREBP/SCAP by promoting cargo loading at ER exit sites. The EMBO journal\| PubMed ID: 30858281	2019
Dependency of the Cancer-Specific Transcriptional Regulation Circuitry on the Promoter DNA Methylome. Cell reports\| PubMed ID: 30893615	2019
Nutrient Sensing by the Intestinal Epithelium Orchestrates Mucosal Antimicrobial Defense via Translational Control of Hes1. Cell host & microbe\| PubMed ID: 31053533	2019
ZEB1 Represses Neural Differentiation and Cooperates with CTBP2 to Dynamically Regulate Cell Migration during Neocortex Development. Cell reports\| PubMed ID: 31116980	2019
Survey of the translation shifts in hepatocellular carcinoma with ribosome profiling. Theranostics\| PubMed ID: 31281537	2019
IDH1 fine-tunes cap-dependent translation initiation. Journal of molecular cell biology\| PubMed ID: 31408165	2019
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human intestine. The Journal of experimental medicine\| PubMed ID: 31753849	2020
Ependyma-expressed CCN1 restricts the size of the neural stem cell pool in the adult ventricular-subventricular zone. The EMBO journal\| PubMed ID: 32009252	2020
eIF3 Associates with 80S Ribosomes to Promote Translation Elongation, Mitochondrial Homeostasis, and Muscle Health. Molecular cell\| PubMed ID: 32589965	2020
Expression and functional study of VpV262 Pol, a moderately halophilic DNA polymerase from the Vibrio parahaemolyticus phage VpV262. Enzyme and microbial technology\| PubMed ID: 32732037	2020
RiboMiner: a toolset for mining multi-dimensional features of the translatome with ribosome profiling data. BMC bioinformatics\| PubMed ID: 32738892	2020
COPII mitigates ER stress by promoting formation of ER whorls. Cell research\| PubMed ID: 32989223	2021
Lateral transfer of mRNA and protein by migrasomes modifies the recipient cells. Cell research\| PubMed ID: 32994478	2020
A Simple Blocking PCR-Based Method for the Synthesis of High-Copy dsDNA Tandem Repeats. Small (Weinheim an der Bergstrasse, Germany)\| PubMed ID: 33006262	2020
Mutual dependency between lncRNA LETN and protein NPM1 in controlling the nucleolar structure and functions sustaining cell proliferation. Cell research\| PubMed ID: 33432115	2021
Chimeric Phi29 DNA polymerase with helix-hairpin-helix motifs shows enhanced salt tolerance and replication performance. Microbial biotechnology\| PubMed ID: 34009743	2021
Identification of the cross-strand chimeric RNAs generated by fusions of bi-directional transcripts. Nature communications\| PubMed ID: 34330918	2021
IGSF11 is required for pericentric heterochromatin dissociation during meiotic diplotene. PLoS genetics\| PubMed ID: 34491997	2021