Gong Zhang

Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes and MOE Key Laboratory of Tumor Molecular Biology, jinan university

Affiliated withjinan university Chi-Biotech Co. Ltd.

Research Area

Biochemistry

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title	2022

Other Publications

Article	Year
FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads. Nucleic acids research\| PubMed ID: 22379138	2012
Binomial probability distribution model-based protein identification algorithm for tandem mass spectrometry utilizing peak intensity information. Journal of proteome research\| PubMed ID: 23163785	2013
Translating mRNAs strongly correlate to proteins in a multivariate manner and their translation ratios are phenotype specific. Nucleic acids research\| PubMed ID: 23519614	2013
Dispec: a novel peptide scoring algorithm based on peptide matching discriminability. PloS one\| PubMed ID: 23675420	2013
Resolving chromosome-centric human proteome with translating mRNA analysis: a strategic demonstration. Journal of proteome research\| PubMed ID: 24200226	2014
How to discover new proteins-translatome profiling. Science China. Life sciences\| PubMed ID: 24532458	2014
Varied metal-binding properties of lipoprotein PsaA in Streptococcus pneumoniae. Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry\| PubMed ID: 24553956	2014
Monitoring of the serum proteome in Kawasaki disease patients before and after immunoglobulin therapy. Biochemical and biophysical research communications\| PubMed ID: 24690176	2014
FANSe2: a robust and cost-efficient alignment tool for quantitative next-generation sequencing applications. PloS one\| PubMed ID: 24743329	2014
Iterative genome correction largely improves proteomic analysis of nonmodel organisms. Journal of proteome research\| PubMed ID: 24809469	2014
Direct interaction of 14-3-3ζ with ezrin promotes cell migration by regulating the formation of membrane ruffle. Journal of molecular biology\| PubMed ID: 25020230	2014
Systematic identification of tRNAome and its dynamics in Lactococcus lactis. Molecular microbiology\| PubMed ID: 25040919	2014
Rational design of translational pausing without altering the amino acid sequence dramatically promotes soluble protein expression: a strategic demonstration. Journal of biotechnology\| PubMed ID: 25238722	2014
Length-dependent translation initiation benefits the functional proteome of human cells. Molecular bioSystems\| PubMed ID: 25353704	2015
Transfer RNAs Mediate the Rapid Adaptation of Escherichia coli to Oxidative Stress. PLoS genetics\| PubMed ID: 26090660	2015
Identification of Missing Proteins Defined by Chromosome-Centric Proteome Project in the Cytoplasmic Detergent-Insoluble Proteins. Journal of proteome research\| PubMed ID: 26108252	2015
Finding Missing Proteins from the Epigenetically Manipulated Human Cell with Stringent Quality Criteria. Journal of proteome research\| PubMed ID: 26202631	2015
Revealing crosstalk of plant and fungi in the symbiotic roots of sewage-cleaning Eichhornia crassipes using direct de novo metatranscriptomic analysis. Scientific reports\| PubMed ID: 26472343	2015
Cytoplasmic hnRNPK interacts with GSK3β and is essential for the osteoclast differentiation. Scientific reports\| PubMed ID: 26638989	2015
Integrated Translatomics with Proteomics to Identify Novel Iron-Transporting Proteins in Streptococcus pneumoniae. Frontiers in microbiology\| PubMed ID: 26870030	2016
Genome-Wide and Experimental Resolution of Relative Translation Elongation Speed at Individual Gene Level in Human Cells. PLoS genetics\| PubMed ID: 26926465	2016
Phosphoproteome Characterization of Human Colorectal Cancer SW620 Cell-Derived Exosomes and New Phosphosite Discovery for C-HPP. Journal of proteome research\| PubMed ID: 27470641	2016
Cytoskeleton-centric protein transportation by exosomes transforms tumor-favorable macrophages. Oncotarget\| PubMed ID: 27602764	2016
Heterogeneity of CD34 and CD38 expression in acute B lymphoblastic leukemia cells is reversible and not hierarchically organized. Journal of hematology & oncology\| PubMed ID: 27660152	2016
Sets of serum exosomal microRNAs as candidate diagnostic biomarkers for Kawasaki disease. Scientific reports\| PubMed ID: 28317854	2017
Low-cost, Low-bias and Low-input RNA-seq with High Experimental Verifiability based on Semiconductor Sequencing. Scientific reports\| PubMed ID: 28432352	2017
The flightless I protein interacts with RNA-binding proteins and is involved in the genome-wide mRNA post-transcriptional regulation in lung carcinoma cells. International journal of oncology\| PubMed ID: 28498392	2017
Protein-Level Integration Strategy of Multiengine MS Spectra Search Results for Higher Confidence and Sequence Coverage. Journal of proteome research\| PubMed ID: 28965417	2017
TranslatomeDB: a comprehensive database and cloud-based analysis platform for translatome sequencing data. Nucleic acids research\| PubMed ID: 29106630	2018
Steady-state structural fluctuation is a predictor of the necessity of pausing-mediated co-translational folding for small proteins. Biochemical and biophysical research communications\| PubMed ID: 29274783	2018
Capturing the interactome of newly transcribed RNA. Nature methods\| PubMed ID: 29431736	2018
Two zinc-binding domains in the transporter AdcA from facilitate high-affinity binding and fast transport of zinc. The Journal of biological chemistry\| PubMed ID: 29491141	2018
In vivo CRISPR screening unveils histone demethylase UTX as an important epigenetic regulator in lung tumorigenesis. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 29632194	2018
Optimal Settings of Mass Spectrometry Open Search Strategy for Higher Confidence. Journal of proteome research\| PubMed ID: 30265008	2018
A peptide encoded by circular form of LINC-PINT suppresses oncogenic transcriptional elongation in glioblastoma. Nature communications\| PubMed ID: 30367041	2018
Translatomics: The Global View of Translation. International journal of molecular sciences\| PubMed ID: 30626072	2019
Enhancing co-translational folding of heterologous protein by deleting non-essential ribosomal proteins in . Biotechnology for biofuels\| PubMed ID: 30828383	2019
Lung cancer deficient in the tumor suppressor GATA4 is sensitive to TGFBR1 inhibition. Nature communications\| PubMed ID: 30971692	2019
Photocatalytic Protein Damage by Silver Nanoparticles Circumvents Bacterial Stress Response and Multidrug Resistance. mSphere\| PubMed ID: 31043515	2019
Misassembly of long reads undermines de novo-assembled ethnicity-specific genomes: validation in a Chinese Han population. Human genetics\| PubMed ID: 31168775	2019
Multifaceted Stoichiometry Control of Bacterial Operons Revealed by Deep Proteome Quantification. Frontiers in genetics\| PubMed ID: 31178895	2019
A hidden human proteome encoded by 'non-coding' genes. Nucleic acids research\| PubMed ID: 31340039	2019
A tumor suppressor enhancing module orchestrated by GATA4 denotes a therapeutic opportunity for GATA4 deficient HCC patients. Theranostics\| PubMed ID: 31903133	2020
De novo transcriptome analysis of the mussel Perna viridis after exposure to the toxic dinoflagellate Prorocentrum lima. Ecotoxicology and environmental safety\| PubMed ID: 32045784	2020
XY-Meta: A High-Efficiency Search Engine for Large-Scale Metabolome Annotation with Accurate FDR Estimation. Analytical chemistry\| PubMed ID: 32212716	2020
Understanding the proteome encoded by "non-coding RNAs": new insights into human genome. Science China. Life sciences\| PubMed ID: 32318910	2020
LINC01419 facilitates hepatocellular carcinoma growth and metastasis through targeting EZH2-regulated RECK. Aging\| PubMed ID: 32522890	2020
The long noncoding RNA lnc-ob1 facilitates bone formation by upregulating Osterix in osteoblasts. Nature metabolism\| PubMed ID: 32694877	2019
Germline variation networks in the PI3K/AKT pathway corresponding to familial high-incidence lung cancer pedigrees. BMC cancer\| PubMed ID: 33297998	2020
Temperature dependence of the SARS-CoV-2 affinity to human ACE2 determines COVID-19 progression and clinical outcome. Computational and structural biotechnology journal\| PubMed ID: 33343834	2021
Autoactivation of Translation Causes the Bloom of in Harmful Algal Blooms. Journal of proteome research\| PubMed ID: 33955761	2021
V367F Mutation in SARS-CoV-2 Spike RBD Emerging during the Early Transmission Phase Enhances Viral Infectivity through Increased Human ACE2 Receptor Binding Affinity. Journal of virology\| PubMed ID: 34105996	2021
Robust Glycogene-Based Prognostic Signature for Proficient Mismatch Repair Colorectal Adenocarcinoma. Frontiers in oncology\| PubMed ID: 34692502	2021
A Network Meta-Analysis of the Clinical Efficacy and Safety of Commonly Used Chinese Patent Medicines in the Auxiliary Treatment of Poststroke Depression. Evidence-based complementary and alternative medicine : eCAM\| PubMed ID: 35035507	2022
Genome Recombination-Mediated tRNA Up-Regulation Conducts General Antibiotic Resistance of Bacteria at Early Stage. Frontiers in microbiology\| PubMed ID: 35126332	2021
Highly Robust Full-Length Protein Sequencing. Analytical chemistry\| PubMed ID: 35171581	2022
Efficient Detection of the Alternative Spliced Human Proteome Using Translatome Sequencing. Frontiers in molecular biosciences\| PubMed ID: 35720116	2022
Potential Material Basis of Yupingfeng Powder for the Prevention and Treatment of 2019 Novel Coronavirus Pneumonia: A Study Involving Molecular Docking and Molecular Dynamic Simulation Techn... BioMed research international\| PubMed ID: 35782070	2022