Xiang-Jun Lu

Department of Biological Sciences, Columbia University

Affiliated withColumbia University

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 63	2013

Other Publications

Article	Year
Bending of DNA by asymmetric charge neutralization: all-atom energy simulations. Journal of the American Chemical Society\| PubMed ID: 11971734	2002
3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. Nucleic acids research\| PubMed ID: 12930962	2003
A structural similarity analysis of double-helical DNA. Journal of molecular biology\| PubMed ID: 15476807	2004
A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction. Journal of structural and functional genomics\| PubMed ID: 15704013	2004
Linking tumor cell cytotoxicity to mechanism of drug action: an integrated analysis of gene expression, small-molecule screening and structural databases. Proteins\| PubMed ID: 15778971	2005
Detecting transcriptionally active regions using genomic tiling arrays. Genome biology\| PubMed ID: 16859498	2006
Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 16880385	2006
Feature extraction using molecular planes for fuzzy relational clustering of a flexible dopamine reuptake inhibitor. Journal of chemical information and modeling\| PubMed ID: 17967005	2007
3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures. Nature protocols\| PubMed ID: 18600227	2008
Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression. PloS one\| PubMed ID: 18769540	2008
New information content in RNA base pairing deduced from quantitative analysis of high-resolution structures. Methods (San Diego, Calif.)\| PubMed ID: 19150407	2009
Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures. Nucleic acids research\| PubMed ID: 19474339	2009
3DNALandscapes: a database for exploring the conformational features of DNA. Nucleic acids research\| PubMed ID: 19906722	2010
The RNA backbone plays a crucial role in mediating the intrinsic stability of the GpU dinucleotide platform and the GpUpA/GpA miniduplex. Nucleic acids research\| PubMed ID: 20223772	2010
Understanding the Sequence Preference of Recurrent RNA Building Blocks using Quantum Chemistry: The Intrastrand RNA Dinucleotide Platform. Journal of chemical theory and computation\| PubMed ID: 22712001	2012
[Measuring soil water content by using near infrared spectral characteristics of soil]. Guang pu xue yu guang pu fen xi = Guang pu\| PubMed ID: 23156763	2012