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Chapters
- 00:05Title
- 01:49Installation of the Software Package
- 04:02Analysis of a Crystal Structure
- 05:22Construction of a DNA Structure from Rigid-body Parameters
- 06:38Analysis of Multi-model Structure Files
- 08:15Superposition of Multi-model Structures onto a Common Reference Frame
- 09:29Construction of a Protein-decorated DNA Molecule
- 11:54Results: Nucleic Acid Structure Analysis and Reconstruction with 3DNA
- 15:52Conclusion
The 3DNA software package is a popular and versatile bioinformatics tool with capabilities to analyze, construct, and visualize three-dimensional nucleic acid structures. This article presents detailed protocols for a subset of new and popular features available in 3DNA, applicable to both individual structures and ensembles of related structures.
Tags
3DNA Software PackageBioinformatics ToolNucleic Acid StructuresAnalyze StructuresConstruct StructuresVisualize StructuresProtocolsDownload SoftwareInstall SoftwareBase Pair AssignmentRigid-body ParametersAtomic Model ReconstructionEnsembles Of StructuresNMR MeasurementsMD SimulationsW3DNA Web ServerUser-friendly InterfaceBuild ModelsDNA MoleculesBound Proteins
