Caroline C. Friedel

Institute for Informatics, Ludwig-Maximilians-University Munich

Affiliated withLudwig-Maximilians-University Munich Ludwig-Maximilians-Universität München

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 101	2013
Publication title Cited by 1	2018

Other Publications

Article	Year
Support vector machines for separation of mixed plant-pathogen EST collections based on codon usage. Bioinformatics (Oxford, England)\| PubMed ID: 15585526	2005
Toward the complete interactome. Nature biotechnology\| PubMed ID: 16763580	2006
Reliable gene signatures for microarray classification: assessment of stability and performance. Bioinformatics (Oxford, England)\| PubMed ID: 16882647	2006
Inferring topology from clustering coefficients in protein-protein interaction networks. BMC bioinformatics\| PubMed ID: 17137490	2006
Analysis of intraviral protein-protein interactions of the SARS coronavirus ORFeome. PloS one\| PubMed ID: 17520018	2007
Influence of degree correlations on network structure and stability in protein-protein interaction networks. BMC bioinformatics\| PubMed ID: 17688687	2007
ProCope--protein complex prediction and evaluation. Bioinformatics (Oxford, England)\| PubMed ID: 18635566	2008
High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA (New York, N.Y.)\| PubMed ID: 18658122	2008
FERN - a Java framework for stochastic simulation and evaluation of reaction networks. BMC bioinformatics\| PubMed ID: 18755046	2008
Identifying the topology of protein complexes from affinity purification assays. Bioinformatics (Oxford, England)\| PubMed ID: 19505940	2009
Conserved principles of mammalian transcriptional regulation revealed by RNA half-life. Nucleic acids research\| PubMed ID: 19561200	2009
Bootstrapping the interactome: unsupervised identification of protein complexes in yeast. Journal of computational biology : a journal of computational molecular cell biology\| PubMed ID: 19630542	2009
Evolutionarily conserved herpesviral protein interaction networks. PLoS pathogens\| PubMed ID: 19730696	2009
Metabolic tagging and purification of nascent RNA: implications for transcriptomics. Molecular bioSystems\| PubMed ID: 19823741	2009
HALO--a Java framework for precise transcript half-life determination. Bioinformatics (Oxford, England)\| PubMed ID: 20299326	2010
Systematic analysis of viral and cellular microRNA targets in cells latently infected with human gamma-herpesviruses by RISC immunoprecipitation assay. Cell host & microbe\| PubMed ID: 20413099	2010
Quantitative proteomics of the integrin adhesome show a myosin II-dependent recruitment of LIM domain proteins. EMBO reports\| PubMed ID: 21311561	2011
Virus-host interactomes and global models of virus-infected cells. Trends in microbiology\| PubMed ID: 21855347	2011
The SARS-coronavirus-host interactome: identification of cyclophilins as target for pan-coronavirus inhibitors. PLoS pathogens\| PubMed ID: 22046132	2011
Genome-wide assessment of AU-rich elements by the AREScore algorithm. PLoS genetics\| PubMed ID: 22242014	2012
A context-based approach to identify the most likely mapping for RNA-seq experiments. BMC bioinformatics\| PubMed ID: 22537048	2012
Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution. Genome research\| PubMed ID: 22539649	2012
Detection and correction of probe-level artefacts on microarrays. BMC bioinformatics\| PubMed ID: 22647057	2012
Real-time transcriptional profiling of cellular and viral gene expression during lytic cytomegalovirus infection. PLoS pathogens\| PubMed ID: 22969428	2012
A comprehensive evaluation of alignment algorithms in the context of RNA-seq. PloS one\| PubMed ID: 23300661	2012
Î²1- and Î±v-class integrins cooperate to regulate myosin II during rigidity sensing of fibronectin-based microenvironments. Nature cell biology\| PubMed ID: 23708002	2013
Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis. Nucleic acids research\| PubMed ID: 23832230	2013
Clonal Expansion Analysis of Transposon Insertions by High-Throughput Sequencing Identifies Candidate Cancer Genes in a PiggyBac Mutagenesis Screen. PloS one\| PubMed ID: 23940809	2013