Zhibo Yang

Department of Chemistry and Biochemistry, University of Oklahoma

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 13	2019

Other Publications

Article	Year
Heregulin induces expression, ATPase activity, and nuclear localization of G3BP, a Ras signaling component, in human breast tumors. Cancer research\| PubMed ID: 11888885	2002
Induction of protective immunity to Listeria monocytogenes by immunization with plasmid DNA expressing a helper T-cell epitope that replaces the class II-associated invariant chain peptide o... Infection and immunity\| PubMed ID: 11953411	2002
A naturally occurring MTA1 variant sequesters oestrogen receptor-alpha in the cytoplasm. Nature\| PubMed ID: 12167865	2002
Suppression of epidermal growth factor receptor, mitogen-activated protein kinase, and Pak1 pathways and invasiveness of human cutaneous squamous cancer cells by the tyrosine kinase inhibito... Molecular cancer therapeutics\| PubMed ID: 12700278	2003
HER2 regulation of peroxisome proliferator-activated receptor gamma (PPARgamma) expression and sensitivity of breast cancer cells to PPARgamma ligand therapy. Clinical cancer research : an official journal of the American Association for Cancer Research\| PubMed ID: 12912973	2003
The epidermal growth factor receptor tyrosine kinase inhibitor ZD1839 (Iressa) suppresses c-Src and Pak1 pathways and invasiveness of human cancer cells. Clinical cancer research : an official journal of the American Association for Cancer Research\| PubMed ID: 14760089	2004
Metastatic tumor antigen 1 short form (MTA1s) associates with casein kinase I-gamma2, an estrogen-responsive kinase. Oncogene\| PubMed ID: 15077195	2004
Upstream determinants of estrogen receptor-alpha regulation of metastatic tumor antigen 3 pathway. The Journal of biological chemistry\| PubMed ID: 15169784	2004
Human epidermal growth factor receptor 2 status modulates subcellular localization of and interaction with estrogen receptor alpha in breast cancer cells. Clinical cancer research : an official journal of the American Association for Cancer Research\| PubMed ID: 15173068	2004
Dynein light chain 1, a p21-activated kinase 1-interacting substrate, promotes cancerous phenotypes. Cancer cell\| PubMed ID: 15193260	2004
Potential role of a novel transcriptional coactivator PELP1 in histone H1 displacement in cancer cells. Cancer research\| PubMed ID: 15374949	2004
Dynein light chain 1 phosphorylation controls macropinocytosis. The Journal of biological chemistry\| PubMed ID: 15504720	2005
Influence of halogenation on the properties of uracil and its noncovalent interactions with alkali metal ions. Threshold collision-induced dissociation and theoretical studies. Journal of the American Chemical Society\| PubMed ID: 15584758	2004
Nuclear localization and chromatin targets of p21-activated kinase 1. The Journal of biological chemistry\| PubMed ID: 15749698	2005
Pak1 phosphorylation of snail, a master regulator of epithelial-to-mesenchyme transition, modulates snail's subcellular localization and functions. Cancer research\| PubMed ID: 15833848	2005
Functional regulation of oestrogen receptor pathway by the dynein light chain 1. EMBO reports\| PubMed ID: 15891768	2005
Functional implications of altered subcellular localization of PELP1 in breast cancer cells. Cancer research\| PubMed ID: 16140940	2005
Cation-pi interactions with a model for the side chain of tryptophan: structures and absolute binding energies of alkali metal cation-indole complexes. The journal of physical chemistry. A\| PubMed ID: 16354046	2005
Influence of thioketo substitution on the properties of uracil and its noncovalent interactions with alkali metal ions: threshold collision-induced dissociation and theoretical studies. The journal of physical chemistry. A\| PubMed ID: 16435805	2006
Charge-remote fragmentation of odd-electron peptide ions. Analytical chemistry\| PubMed ID: 17676923	2007
Influence of the d orbital occupation on the nature and strength of copper cation-pi interactions: threshold collision-induced dissociation and theoretical studies. Physical chemistry chemical physics : PCCP\| PubMed ID: 17989799	2007
Energetics and dynamics of electron transfer and proton transfer in dissociation of metal(III)(salen)-peptide complexes in the gas phase. Journal of the American Chemical Society\| PubMed ID: 18266367	2008
Experimental and theoretical studies of the structures and interactions of vancomycin antibiotics with cell wall analogues. Journal of the American Chemical Society\| PubMed ID: 18774809	2008
The effect of the secondary structure on dissociation of peptide radical cations: fragmentation of angiotensin III and its analogues. The journal of physical chemistry. B\| PubMed ID: 18781717	2008
Influence of the charge state on the structures and interactions of vancomycin antibiotics with cell-wall analogue peptides: experimental and theoretical studies. Chemistry (Weinheim an der Bergstrasse, Germany)\| PubMed ID: 19156658	2009
Fragmentation of alpha-radical cations of arginine-containing peptides. Journal of the American Society for Mass Spectrometry\| PubMed ID: 20138543	2010
The influence of spin effects on the gas phase reactions of carbanions with N and O atoms. Journal of the American Chemical Society\| PubMed ID: 20359194	2010
Computational studies of gas phase reactions of carbon chain anions with N and O atoms. Physical chemistry chemical physics : PCCP\| PubMed ID: 20830383	2010
Effect of the basic residue on the energetics, dynamics, and mechanisms of gas-phase fragmentation of protonated peptides. Journal of the American Chemical Society\| PubMed ID: 20977217	2010
Arachidonate 12-lipoxygenase may serve as a potential marker and therapeutic target for prostate cancer stem cells. International journal of oncology\| PubMed ID: 21225230	2011
Competition between covalent and noncovalent bond cleavages in dissociation of phosphopeptide-amine complexes. Physical chemistry chemical physics : PCCP\| PubMed ID: 21387029	2011
Gas phase reactions of 1,3,5-triazine: proton transfer, hydride transfer, and anionic σ-adduct formation. Journal of the American Society for Mass Spectrometry\| PubMed ID: 21953109	2011
Tautomerization in the formation and collision-induced dissociation of alkali metal cation-cytosine complexes. Physical chemistry chemical physics : PCCP\| PubMed ID: 22361913	2012
Gas-phase reactions of the atomic oxygen radical cation with halogenated compounds. Physical chemistry chemical physics : PCCP\| PubMed ID: 23174884	2013
Preparation of 3D nanoporous copper-supported cuprous oxide for high-performance lithium ion battery anodes. Nanoscale\| PubMed ID: 23354412	2013
Influence of polyelectrolyte multilayer coating on the degree and type of biofouling in freshwater environment. Journal of nanoscience and nanotechnology\| PubMed ID: 24738394	2014
Quantitative damage detection and sparse sensor array optimization of carbon fiber reinforced resin composite laminates for wind turbine blade structural health monitoring. Sensors (Basel, Switzerland)\| PubMed ID: 24763210	2014
The single-probe: a miniaturized multifunctional device for single cell mass spectrometry analysis. Analytical chemistry\| PubMed ID: 25222919	2014
Germanium anode with excellent lithium storage performance in a germanium/lithium-cobalt oxide lithium-ion battery. ACS nano\| PubMed ID: 25629917	2015
High Resolution Tissue Imaging Using the Single-probe Mass Spectrometry under Ambient Conditions. Journal of the American Society for Mass Spectrometry\| PubMed ID: 25804891	2015
Damage Detection Based on Static Strain Responses Using FBG in a Wind Turbine Blade. Sensors (Basel, Switzerland)\| PubMed ID: 26287200	2015
High-Resolution Ambient MS Imaging of Negative Ions in Positive Ion Mode: Using Dicationic Reagents with the Single-Probe. Journal of the American Society for Mass Spectrometry\| PubMed ID: 26489411	2016
Experimental and Theoretical Studies of the Reactivity and Thermochemistry of Dicyanamide: N(CN)2(.). The journal of physical chemistry. A\| PubMed ID: 26883792	2016
Using Dicationic Ion-Pairing Compounds to Enhance the Single Cell Mass Spectrometry Analysis using the Single-probe: A Microscale Sampling and Ionization Device. Analytical chemistry\| PubMed ID: 27239862	2016
Microscale Mass Spectrometry Analysis of Extracellular Metabolites in Live Multicellular Tumor Spheroids. Analytical chemistry\| PubMed ID: 28753268	2017
Unique amalgamation of primary and secondary structural elements transform peptaibols into potent bioactive cell-penetrating peptides. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 29073092	2017
Metabolomic Fingerprints of Individual Algal Cells Using the Single-Probe Mass Spectrometry Technique. Frontiers in plant science\| PubMed ID: 29760716	2018
T-Probe: An Integrated Microscale Device for Online In Situ Single Cell Analysis and Metabolic Profiling Using Mass Spectrometry. Analytical chemistry\| PubMed ID: 30119596	2018
Towards enhanced metabolomic data analysis of mass spectrometry image: Multivariate Curve Resolution and Machine Learning. Analytica chimica acta\| PubMed ID: 30292295	2018
Towards rapid prediction of drug-resistant cancer cell phenotypes: single cell mass spectrometry combined with machine learning. Chemical communications (Cambridge, England)\| PubMed ID: 30525135	2019
Transient Compound Treatment Induces a Multigenerational Reduction of Oxysterol-Binding Protein (OSBP) Levels and Prophylactic Antiviral Activity. ACS chemical biology\| PubMed ID: 30576108	2019
Metabolomic Studies of Live Single Cancer Stem Cells Using Mass Spectrometry. Analytical chemistry\| PubMed ID: 30582812	2019
Mass Spectrometry Measurement of Single Suspended Cells Using a Combined Cell Manipulation System and a Single-Probe Device. Analytical chemistry\| PubMed ID: 30644722	2019
Anticancer Drug Affects Metabolomic Profiles in Multicellular Spheroids: Studies Using Mass Spectrometry Imaging Combined with Machine Learning. Analytical chemistry\| PubMed ID: 30951294	2019
Integrating a generalized data analysis workflow with the Single-probe mass spectrometry experiment for single cell metabolomics. Analytica chimica acta\| PubMed ID: 30982520	2019
Quantification of Drug Molecules in Live Single Cells Using the Single-Probe Mass Spectrometry Technique. Analytical chemistry\| PubMed ID: 31246408	2019
Redesigning the T-probe for mass spectrometry analysis of online lysis of non-adherent single cells. Analytica chimica acta\| PubMed ID: 31519234	2019
Multimodal Imaging of Amyloid Plaques: Fusion of the Single-Probe Mass Spectrometry Image and Fluorescence Microscopy Image. Analytical chemistry\| PubMed ID: 31536324	2019
Single-Probe Mass Spectrometry Analysis of Metabolites in Single Cells. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 31565766	2020
Towards early monitoring of chemotherapy-induced drug resistance based on single cell metabolomics: Combining single-probe mass spectrometry with machine learning. Analytica chimica acta\| PubMed ID: 31708031	2019
ZIP4 Increases Expression of Transcription Factor ZEB1 to Promote Integrin α3β1 Signaling and Inhibit Expression of the Gemcitabine Transporter ENT1 in Pancreatic Cancer Cells. Gastroenterology\| PubMed ID: 31711924	2020
Editorial: Single Plant Cell Metabolomics. Frontiers in plant science\| PubMed ID: 32194588	2020
Combining Mass Spectrometry with Paternò-Büchi Reaction to Determine Double-Bond Positions in Lipids at the Single-Cell Level. Analytical chemistry\| PubMed ID: 32678580	2020
Constructing Spin-Adiabatic States for the Modeling of Spin-Crossing Reactions. I. A Shared-Orbital Implementation. International journal of quantum chemistry\| PubMed ID: 32773885	2020
Analysis and visualization of energy densities. I. Insights from real-time time-dependent density functional theory simulations. Physical chemistry chemical physics : PCCP\| PubMed ID: 33170198	2020
Analysis and visualization of energy densities. II. Insights from linear-response time-dependent density functional theory calculations. Physical chemistry chemical physics : PCCP\| PubMed ID: 33216085	2020
Single cell metabolomics using mass spectrometry: Techniques and data analysis. Analytica chimica acta\| PubMed ID: 33384110	2021
Single Cell Mass Spectrometry Quantification of Anticancer Drugs: Proof of Concept in Cancer Patients. ACS pharmacology & translational science\| PubMed ID: 33615163	2021
Mass spectrometry-based proteomic platforms for better understanding of SARS-CoV-2 induced pathogenesis and potential diagnostic approaches. Proteomics\| PubMed ID: 33860983	2021
Correction: Analysis and visualization of energy densities. I. Insights from real-time time-dependent density functional theory simulations. Physical chemistry chemical physics : PCCP\| PubMed ID: 33876053	2021
Extract Metabolomic Information from Mass Spectrometry Images Using Advanced Data Analysis. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 34902154	2022
Single cell mass spectrometry analysis of drug-resistant cancer cells: Metabolomics studies of synergetic effect of combinational treatment. Analytica chimica acta\| PubMed ID: 35300794	2022
Single cell mass spectrometry studies reveal metabolomic features and potential mechanisms of drug-resistant cancer cell lines. Analytica chimica acta\| PubMed ID: 35473873	2022
Metabolomics studies of cell-cell interactions using single cell mass spectrometry combined with fluorescence microscopy. Chemical science\| PubMed ID: 35756524	2022
Single-Cell Mass Spectrometry Enables Insight into Heterogeneity in Infectious Disease. Analytical chemistry\| PubMed ID: 35863111	2022
Meeting Report on the 2nd Chinese American Society for Mass Spectrometry Conference: Advancing Biological and Pharmaceutical Mass Spectrometry. Molecular & cellular proteomics : MCP\| PubMed ID: 37105363	2023
Quantifying Cell Heterogeneity and Subpopulations Using Single Cell Metabolomics. Analytical chemistry\| PubMed ID: 37115510	2023
Proteomics evaluation of five economical commercial abundant protein depletion kits for enrichment of diseases-specific biomarkers from blood serum. Proteomics\| PubMed ID: 37199141	2023
Visualization of Electron Density Changes Along Chemical Reaction Pathways. Molecular physics\| PubMed ID: 37638114	2023
Meeting Report on the 3rd Chinese American Society for Mass Spectrometry Conference-Advancing Biological and Pharmaceutical Mass Spectrometry. Biomedical chromatography : BMC\| PubMed ID: 38071756	2024
Quantification of Nitric Oxide in Single Cells Using the Single-Probe Mass Spectrometry Technique. Analytical chemistry\| PubMed ID: 38092461	2023
Urine proteome profile of firefighters with exposure to emergency fire-induced smoke: A pilot study to identify potential carcinogenic effects. The Science of the total environment\| PubMed ID: 38583625	2024
Comparative Seed Proteome Profile Reveals No Alternation of Major Allergens in High-Yielding Mung Bean Cultivars. Journal of agricultural and food chemistry\| PubMed ID: 38836763	2024
Proteomics Analysis of Interactions between Drug-Resistant and Drug-Sensitive Cancer Cells: Comparative Studies of Monoculture and Coculture Cell Systems. Journal of proteome research\| PubMed ID: 38907724	2024
MassLite: An integrated python platform for single cell mass spectrometry metabolomics data pretreatment with graphical user interface and advanced peak alignment method. Analytica chimica acta\| PubMed ID: 39244309	2024
Single Cell mass spectrometry: Towards quantification of small molecules in individual cells. Trends in analytical chemistry : TRAC\| PubMed ID: 39391010	2024
Mass Spectrometry Quantification of Anticancer Drug Uptake in Single Multicellular Tumor Spheroids. ACS pharmacology & translational science\| PubMed ID: 39416972	2024
MetaPhenotype: A Transferable Meta-Learning Model for Single-Cell Mass Spectrometry-Based Cell Phenotype Prediction Using Limited Number of Cells. Analytical chemistry\| PubMed ID: 39570119	2024
Impact of Mlkl or Ripk3 deletion on age-associated liver inflammation, metabolic health, and lifespan. GeroScience\| PubMed ID: 39930289	2025
Exploring Single-Probe Single-Cell Mass Spectrometry: Current Trends and Future Directions. Analytical chemistry\| PubMed ID: 39999987	2025
Frontiers in Mass Spectrometry-Based Spatial Metabolomics: Current Applications and Challenges in the Context of Biomedical Research. Trends in analytical chemistry : TRAC\| PubMed ID: 40094101	2024
The embryonic DPPA3 gene stimulates the expression of pregnancy-related genes in bovine endometrial cells. Journal of dairy science\| PubMed ID: 40222672	2025
Developing a Cell Quenching Method to Facilitate Single Cell Mass Spectrometry Metabolomics Studies. JACS Au\| PubMed ID: 40443889	2025
Methionine supplementation-induced alteration of sheep seminal plasma miRNAs and proteome. Journal of animal science\| PubMed ID: 40495297	2025
Regulating the Growth of Cesium Lead Bromide Quantum Dots at a Liquid/Liquid Interface Constrained in a Micropipette. Small methods\| PubMed ID: 40801159	2025