Fred E. Regnier

Department of Chemistry, Purdue University

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 13	2009

Other Publications

Article	Year
Comparative proteomics based on stable isotope labeling and affinity selection. Journal of mass spectrometry : JMS\| PubMed ID: 11857757	2002
Quantifying peptides in isotopically labeled protease digests by ion mobility/time-of-flight mass spectrometry. Analytical chemistry\| PubMed ID: 11924997	2002
Quantitative proteomics strategy involving the selection of peptides containing both cysteine and histidine from tryptic digests of cell lysates. Journal of chromatography. A\| PubMed ID: 11999731	2002
Global internal standard technology for comparative proteomics. Journal of chromatography. A\| PubMed ID: 11999733	2002
Controlling deuterium isotope effects in comparative proteomics. Analytical chemistry\| PubMed ID: 12175151	2002
Protein proteolysis and the multi-dimensional electrochromatographic separation of histidine-containing peptide fragments on a chip. Journal of chromatography. A\| PubMed ID: 12564680	2003
Minimizing resolution of isotopically coded peptides in comparative proteomics. Journal of proteome research\| PubMed ID: 12643534	2002
An isotope coding strategy for proteomics involving both amine and carboxyl group labeling. Journal of proteome research\| PubMed ID: 12645916	2002
Stopped-flow enzyme assays on a chip using a microfabricated mixer. Analytical chemistry\| PubMed ID: 12713034	2003
Regio-specific adsorption of cytochrome c on negatively charged surfaces. Analytical chemistry\| PubMed ID: 12713053	2003
Capillary electrochromatography of peptides on microfabricated poly(dimethylsiloxane) chips modified by cerium(IV)-catalyzed polymerization. Journal of chromatography. A\| PubMed ID: 12831199	2002
Histidine-rich peptide selection and quantification in targeted proteomics. Journal of proteome research\| PubMed ID: 14998161	2004
Effect of microenvironment pH of aluminum hydroxide adjuvant on the chemical stability of adsorbed antigen. Vaccine\| PubMed ID: 15003645	2004
Potential of silica monolithic columns in peptide separations. Journal of chromatography. A\| PubMed ID: 15043268	2004
Contributions of commercial sorbents to the selectivity in immobilized metal affinity chromatography with Cu(II). Journal of chromatography. A\| PubMed ID: 15058570	2004
Proteomic analysis of Arabidopsis glutathione S-transferases from benoxacor- and copper-treated seedlings. The Journal of biological chemistry\| PubMed ID: 15069083	2004
High-speed label-free detection by spinning-disk micro-interferometry. Biosensors & bioelectronics\| PubMed ID: 15093207	2004
Proteomic analysis of carbonylated proteins in two-dimensional gel electrophoresis using avidin-fluorescein affinity staining. Electrophoresis\| PubMed ID: 15174056	2004
Enrichment of cysteine-containing peptides from tryptic digests using a quaternary amine tag. Analytical chemistry\| PubMed ID: 15283597	2004
New approach for analysis of the phosphotyrosine proteome and its application to the chicken B cell line, DT40. Journal of proteome research\| PubMed ID: 15359727	2004
Benzoyl derivatization as a method to improve retention of hydrophilic peptides in tryptic peptide mapping. Analytical chemistry\| PubMed ID: 15456300	2004
Optimization of diagonal chromatography for recognizing post-translational modifications. Journal of chromatography. A\| PubMed ID: 15460252	2004
Processing of data generated by 2-dimensional gel electrophoresis for statistical analysis: missing data, normalization, and statistics. Journal of proteome research\| PubMed ID: 15595730	2004
Use of multidimensional lectin affinity chromatography in differential glycoproteomics. Analytical chemistry\| PubMed ID: 15859596	2005
An automated method for the analysis of stable isotope labeling data in proteomics. Journal of the American Society for Mass Spectrometry\| PubMed ID: 15922621	2005
Recent advancements in differential proteomics based on stable isotope coding. Briefings in functional genomics & proteomics\| PubMed ID: 16102271	2005
Comparative glycoproteomics of N-linked complex-type glycoforms containing sialic acid in human serum. Analytical chemistry\| PubMed ID: 16285669	2005
Primary amine coding as a path to comparative proteomics. Proteomics\| PubMed ID: 16800033	2006
Enhancement of amino acid detection and quantification by electrospray ionization mass spectrometry. Analytical chemistry\| PubMed ID: 16808485	2006
Targeted glycoproteomics: serial lectin affinity chromatography in the selection of O-glycosylation sites on proteins from the human blood proteome. Journal of chromatography. A\| PubMed ID: 16919642	2006
Neural network prediction of peptide separation in strong anion exchange chromatography. Bioinformatics (Oxford, England)\| PubMed ID: 17092987	2007
Destabilization of DJ-1 by familial substitution and oxidative modifications: implications for Parkinson's disease. Biochemistry\| PubMed ID: 17451229	2007
An isotope coding strategy for proteomics involving both amine and carboxyl group labeling. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 17484114	2007
Enhancement of the LC/MS analysis of fatty acids through derivatization and stable isotope coding. Analytical chemistry\| PubMed ID: 17492837	2007
Adaptive interferometry of protein on a BioCD. Applied optics\| PubMed ID: 17676154	2007
Differential metabolomics using stable isotope labeling and two-dimensional gas chromatography with time-of-flight mass spectrometry. Analytical chemistry\| PubMed ID: 18052339	2008
Comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry peak sorting algorithm. Journal of chromatography. A\| PubMed ID: 18093607	2008
Two-dimensional correlation optimized warping algorithm for aligning GC x GC-MS data. Analytical chemistry\| PubMed ID: 18351753	2008
Use of glycan targeting antibodies to identify cancer-associated glycoproteins in plasma of breast cancer patients. Analytical chemistry\| PubMed ID: 18558770	2008
Simultaneous quantification of metabolites involved in central carbon and energy metabolism using reversed-phase liquid chromatography-mass spectrometry and in vitro 13C labeling. Analytical chemistry\| PubMed ID: 19007244	2008
Comparative metabolite profiling of carboxylic acids in rat urine by CE-ESI MS/MS through positively pre-charged and (2)H-coded derivatization. Electrophoresis\| PubMed ID: 19035407	2008
Glycoproteomics of plasma based on narrow selectivity lectin affinity chromatography. Journal of proteome research\| PubMed ID: 19099503	2009
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nature biotechnology\| PubMed ID: 19561596	2009
Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses. Molecular & cellular proteomics : MCP\| PubMed ID: 19837981	2010
Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance. Molecular & cellular proteomics : MCP\| PubMed ID: 19858499	2010
Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry. Journal of proteome research\| PubMed ID: 19921851	2010
Oxidative stress studies in yeast with a frataxin mutant: a proteomics perspective. Journal of proteome research\| PubMed ID: 19957947	2010
Sweetening the pot: adding glycosylation to the biomarker discovery equation. Clinical chemistry\| PubMed ID: 19959616	2010
In vitro stable isotope labeling for discovery of novel metabolites by liquid chromatography-mass spectrometry: Confirmation of gamma-tocopherol metabolism in human A549 cell. Journal of chromatography. A\| PubMed ID: 20006340	2010
Protein-based multiplex assays: mock presubmissions to the US Food and Drug Administration. Clinical chemistry\| PubMed ID: 20007858	2010
Analytical validation of protein-based multiplex assays: a workshop report by the NCI-FDA interagency oncology task force on molecular diagnostics. Clinical chemistry\| PubMed ID: 20007859	2010
Profiling carbonylated proteins in human plasma. Journal of proteome research\| PubMed ID: 20121119	2010
Multi-dimensional liquid chromatography in proteomics--a review. Analytica chimica acta\| PubMed ID: 20363391	2010
Screening antibody and immunosorbent selectivity by two-dimensional liquid chromatography-MS/MS (2-D LC-MS/MS). Journal of separation science\| PubMed ID: 20405482	2010
Proteomic identification of carbonylated proteins and their oxidation sites. Journal of proteome research\| PubMed ID: 20521848	2010
A lectin affinity workflow targeting glycosite-specific, cancer-related carbohydrate structures in trypsin-digested human plasma. Analytical biochemistry\| PubMed ID: 20705048	2011
Sialylated Lewis x antigen bearing glycoproteins in human plasma. Journal of proteome research\| PubMed ID: 20858014	2010
Dynamics of protein damage in yeast frataxin mutant exposed to oxidative stress. Omics : a journal of integrative biology\| PubMed ID: 20958246	2010
Coupling protein complex analysis to peptide based proteomics. Journal of chromatography. A\| PubMed ID: 21036361	2010
A large, consistent plasma proteomics data set from prospectively collected breast cancer patient and healthy volunteer samples. Journal of translational medicine\| PubMed ID: 21619653	2011
Differential carbonylation of proteins as a function of in vivo oxidative stress. Journal of proteome research\| PubMed ID: 21800835	2011
Oxidative stress induced carbonylation in human plasma. Journal of proteomics\| PubMed ID: 21856457	2011
Determining the effects of antioxidants on oxidative stress induced carbonylation of proteins. Analytical chemistry\| PubMed ID: 21939227	2011
Effect of Single Amino Acid Substitution on Oxidative Modifications of the Parkinson's Disease-Related Protein, DJ-1. Molecular & cellular proteomics : MCP\| PubMed ID: 22104028	2012
A lectin chromatography/mass spectrometry discovery workflow identifies putative biomarkers of aggressive breast cancers. Journal of proteome research\| PubMed ID: 22309216	2012