Edward F. DeLong

Division of Biological Engineering, MIT - Massachusetts Institute of Technology

Affiliated withMIT - Massachusetts Institute of Technology

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 9	2007
Publication title	2007

Other Publications

Article	Year
Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces. Applied and environmental microbiology\| PubMed ID: 11772643	2002
Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea. Applied and environmental microbiology\| PubMed ID: 11823205	2002
Unsuspected diversity among marine aerobic anoxygenic phototrophs. Nature\| PubMed ID: 11832943	2002
Towards microbial systems science: integrating microbial perspective, from genomes to biomes. Environmental microbiology\| PubMed ID: 11966814	2002
Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 12032340	2002
Power from the deep. Nature biotechnology\| PubMed ID: 12148004	2002
Microbial population genomics and ecology. Current opinion in microbiology\| PubMed ID: 12354561	2002
Microbiology: all in the packaging. Nature\| PubMed ID: 12384680	2002
Molecular diversity among marine picophytoplankton as revealed by psbA analyses. Environmental microbiology\| PubMed ID: 12588300	2003
Growth and methane oxidation rates of anaerobic methanotrophic archaea in a continuous-flow bioreactor. Applied and environmental microbiology\| PubMed ID: 12957936	2003
Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea. Applied and environmental microbiology\| PubMed ID: 12957937	2003
Novel Proteorhodopsin variants from the Mediterranean and Red Seas. Environmental microbiology\| PubMed ID: 14510837	2003
Proteorhodopsin genes are distributed among divergent marine bacterial taxa. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 14566056	2003
Microbiology: reconstructing the wild types. Nature\| PubMed ID: 14999264	2004
Microbial population genomics and ecology: the road ahead. Environmental microbiology\| PubMed ID: 15305912	2004
Different SAR86 subgroups harbour divergent proteorhodopsins. Environmental microbiology\| PubMed ID: 15305915	2004
Reverse methanogenesis: testing the hypothesis with environmental genomics. Science (New York, N.Y.)\| PubMed ID: 15353801	2004
Microbiology. Microbial life breathes deep. Science (New York, N.Y.)\| PubMed ID: 15622564	2004
Microbial community genomics in the ocean. Nature reviews. Microbiology\| PubMed ID: 15886695	2005
Growth and population dynamics of anaerobic methane-oxidizing archaea and sulfate-reducing bacteria in a continuous-flow bioreactor. Applied and environmental microbiology\| PubMed ID: 16000782	2005
Histones in crenarchaea. Journal of bacteriology\| PubMed ID: 16030242	2005
Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta. Applied and environmental microbiology\| PubMed ID: 16085882	2005
Genomic perspectives in microbial oceanography. Nature\| PubMed ID: 16163343	2005
Community genomics among stratified microbial assemblages in the ocean's interior. Science (New York, N.Y.)\| PubMed ID: 16439655	2006
Comparative genomics of DNA fragments from six Antarctic marine planktonic bacteria. Applied and environmental microbiology\| PubMed ID: 16461708	2006
Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea. Nature\| PubMed ID: 16482157	2006
Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS biology\| PubMed ID: 16533068	2006
Genomic islands and the ecology and evolution of Prochlorococcus. Science (New York, N.Y.)\| PubMed ID: 16556843	2006
Archaeal mysteries of the deep revealed. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 16618931	2006
Archaeal pre-mRNA splicing: a connection to hetero-oligomeric splicing endonuclease. Biochemical and biophysical research communications\| PubMed ID: 16781672	2006
Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 17114289	2006
Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla. Environmental microbiology\| PubMed ID: 17359257	2007
Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environmental microbiology\| PubMed ID: 17472632	2007
Microbiology. Life on the thermodynamic edge. Science (New York, N.Y.)\| PubMed ID: 17641187	2007
Low genomic diversity in tropical oceanic N2-fixing cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 17971441	2007
Design and testing of 'genome-proxy' microarrays to profile marine microbial communities. Environmental microbiology\| PubMed ID: 18028413	2008
Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes. The ISME journal\| PubMed ID: 18043661	2007
Microbial community gene expression in ocean surface waters. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 18316740	2008
Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre. Environmental microbiology\| PubMed ID: 18494796	2008
The microbial engines that drive Earth's biogeochemical cycles. Science (New York, N.Y.)\| PubMed ID: 18497287	2008
Genomic patterns of recombination, clonal divergence and environment in marine microbial populations. The ISME journal\| PubMed ID: 18580971	2008
Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods. Environmental microbiology\| PubMed ID: 18771500	2009
Modern microbial seascapes. Forward. Nature reviews. Microbiology\| PubMed ID: 19086145	2007
Near real-time, autonomous detection of marine bacterioplankton on a coastal mooring in Monterey Bay, California, using rRNA-targeted DNA probes. Environmental microbiology\| PubMed ID: 19210704	2009
The microbial ocean from genomes to biomes. Nature\| PubMed ID: 19444206	2009
Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column. Nature\| PubMed ID: 19444216	2009
Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre. Applied and environmental microbiology\| PubMed ID: 19542347	2009
Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses. Environmental microbiology\| PubMed ID: 19788654	2010
Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean. Environmental microbiology\| PubMed ID: 20002133	2010
Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics. The ISME journal\| PubMed ID: 20220791	2010
The light-driven proton pump proteorhodopsin enhances bacterial survival during tough times. PLoS biology\| PubMed ID: 20436957	2010
Time-series analyses of Monterey Bay coastal microbial picoplankton using a 'genome proxy' microarray. Environmental microbiology\| PubMed ID: 20695878	2011
Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 20807744	2010
A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast. Science (New York, N.Y.)\| PubMed ID: 21071631	2010
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean. The ISME journal\| PubMed ID: 21151004	2011
Microbial metatranscriptomics in a permanent marine oxygen minimum zone. Environmental microbiology\| PubMed ID: 21210935	2012
Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010. Standards in genomic sciences\| PubMed ID: 21304724	2010
Meeting Report: BioSharing at ISMB 2010. Standards in genomic sciences\| PubMed ID: 21304729	2010
Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities. Genome biology\| PubMed ID: 21426537	2011
Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium. The ISME journal\| PubMed ID: 21472017	2011
Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton. The ISME journal\| PubMed ID: 21716310	2011
Metatranscriptomic analysis of sulfur oxidation genes in the endosymbiont of solemya velum. Frontiers in microbiology\| PubMed ID: 21738524	2011
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science (New York, N.Y.)\| PubMed ID: 21885783	2011
Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment. Environmental microbiology\| PubMed ID: 21981709	2012
Phosphite utilization by the marine picocyanobacterium Prochlorococcus MIT9301. Environmental microbiology\| PubMed ID: 22004069	2011
Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis. The ISME journal\| PubMed ID: 22534608	2012
Evolution. Microbial evolution in the wild. Science (New York, N.Y.)\| PubMed ID: 22539708	2012
PhnY and PhnZ comprise a new oxidative pathway for enzymatic cleavage of a carbon-phosphorus bond. Journal of the American Chemical Society\| PubMed ID: 22564006	2012
Experimental incubations elicit profound changes in community transcription in OMZ bacterioplankton. PloS one\| PubMed ID: 22615914	2012
Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria. Standards in genomic sciences\| PubMed ID: 22675578	2011
Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone. Ecology\| PubMed ID: 22919912	2012
Microbial oceanography of anoxic oxygen minimum zones. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22967509	2012
Oxygen minimum zones harbour novel viral communities with low diversity. Environmental microbiology\| PubMed ID: 23039259	2012
Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23169633	2012
Pattern and synchrony of gene expression among sympatric marine microbial populations. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23345438	2013
Characterization of canthaxanthin biosynthesis genes from an uncultured marine bacterium. Environmental microbiology reports\| PubMed ID: 23765931	2009
Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone. The ISME journal\| PubMed ID: 24030599	2014
Preface. Microbial metagenomics, metatranscriptomics, and metaproteomics. Methods in enzymology\| PubMed ID: 24060136	2013
Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus, Pelagibacter and the OM60 clade. Environmental microbiology\| PubMed ID: 24118765	2014
Metatranscriptomic and functional metagenomic analysis of methylphosphonate utilization by marine bacteria. Frontiers in microbiology\| PubMed ID: 24324460	2013
Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype. The ISME journal\| PubMed ID: 24451205	2014
Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24706784	2014
Closely related phytoplankton species produce similar suites of dissolved organic matter. Frontiers in microbiology\| PubMed ID: 24748874	2014
Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24946804	2014
Ocean microbes. Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages. Science (New York, N.Y.)\| PubMed ID: 25013074	2014
Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. PLoS biology\| PubMed ID: 25093819	2014
Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome. Standards in genomic sciences\| PubMed ID: 25197450	2014
Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013). Standards in genomic sciences\| PubMed ID: 25197495	2014
Reply to Schouten et al.: Marine Group II planktonic Euryarchaeota are significant contributors to tetraether lipids in the ocean. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 25239231	2014
Alien invasions and gut "island biogeography". Cell\| PubMed ID: 25303519	2014
Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile. mBio\| PubMed ID: 25352619	2014
Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile. Frontiers in microbiology\| PubMed ID: 25389417	2014
Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone. The ISME journal\| PubMed ID: 25700337	2015
Microbial community transcriptional networks are conserved in three domains at ocean basin scales. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 25775583	2015