Fresh Frozen Tissue

Fresh frozen tissue is biological tissue rapidly frozen without chemical fixation to preserve cellular architecture and molecular constituents for later analysis. Typically, a specimen is embedded in a freezing medium such as optimal cutting temperature compound, snap-frozen using liquid nitrogen or a chilled solvent, and stored at very low temperatures; a cryostat then produces thin sections for staining or molecular assays. In biology, this preparation supports histology, immunohistochemistry, nucleic-acid and protein studies, and biobanking, while reducing fixation-related alteration of labile molecules. It is especially valuable when researchers need to connect tissue morphology with genomic, transcriptomic, or biochemical measurements.

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Research

JoVE EoE - Cancers of the Nervous System

Frozen Mouse Brain Tissue Sectioning: A Procedure to Obtain Thin Frozen Tissue Sections from Frozen Murine Brain Tissue

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2023

In this video, we demonstrate the sectioning of a frozen mouse brain tumor tissue using a cryostat. The frozen brain tissue sections so obtained are stored at low temperatures until further analysis.

Isolation of Nuclei from Fresh Frozen Glioma Tissues: A Method to Obtain Intact Nuclei from Glioma Tumor Samples

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2023

This video describes the protocol to isolate single-nuclei from fresh frozen glioma tissue. The isolated single-nuclei can be used as specimens for sequencing techniques such as single-nuclei RNA (snRNA) sequencing and single-nuclei Assay for Transposase-Accessible Chromatin (snATAC) sequencing to obtain deeper insights into inter- and intra-tumor heterogeneity observed in glioma of the central nervous tissues.

Fluorescence Activated Cell Sorting (FACS) and Gene Expression Analysis of Fos-expressing Neurons from Fresh and Frozen Rat Brain Tissue

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Cited by 34 •

2016

Here we present a Fluorescence Activated Cell Sorting (FACS) protocol to study molecular alterations in Fos-expressing neuronal ensembles from both fresh and frozen brain tissue. The use of frozen tissue allows FACS isolation of many brain areas over multiple sessions to maximize the use of valuable animal subjects.

Subcellular Fractionation from Fresh and Frozen Gastrointestinal Specimens

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Cited by 2 •

2018

Here, we present a protocol to perform a simple cellular fractionation for the subcellular separation of cytoplasmic and nuclear proteins in human fresh and frozen intestinal biopsies.

Optimization of Laser-Capture Microdissection for the Isolation of Enteric Ganglia from Fresh-Frozen Human Tissue

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Cited by 9 •

2018

The goal of this protocol is to obtain high-integrity RNA samples from enteric ganglia isolated from unfixed, freshly-resected human intestinal tissue using laser capture microdissection (LCM). This protocol involves preparing flash-frozen samples of human intestinal tissue, cryosectioning, ethanolic staining and dehydration, LCM, and RNA extraction.

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