Spectral Angle Mapper

Spectral Angle Mapper (SAM) is a supervised classification technique that identifies materials by comparing their measured spectral signatures with reference spectra, making it useful for interpreting hyperspectral data in chemistry and related fields. It treats each spectrum as a vector and calculates the angle between the unknown and reference vectors; a smaller angle indicates greater spectral similarity, while this angular comparison reduces sensitivity to overall signal intensity. Researchers use SAM to classify chemical constituents, minerals, and other materials in hyperspectral images, supporting compositional mapping, quality assessment, and analysis of spatially distributed samples. Its effectiveness depends on representative reference spectra and suitable threshold settings.

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Research

JoVE Journal - Engineering

Spectral and Angle-Resolved Magneto-Optical Characterization of Photonic Nanostructures

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2019

Photonic band structure enables understanding how confined electromagnetic modes propagate within a photonic crystal. In photonic crystals that incorporate magnetic elements, such confined and resonant optical modes are accompanied by enhanced and modified magneto-optical activity. We describe a measurement procedure to extract the magneto-optical band structure by Fourier space microscopy.

Integrated Photoacoustic Ophthalmoscopy and Spectral-domain Optical Coherence Tomography

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Cited by 24 •

2013

Photoacoustic ophthalmology (PAOM), an optical-absorption-based imaging modality, provides the complementary evaluation of the retina to the currently available ophthalmic imaging technologies. We report the using of PAOM integrated with spectral-domain optical coherence tomography (SD-OCT) for simultaneous multimodal retinal imaging in rats.

Education

JoVE Core - Physics

Contact Angle

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2023

When a solid is dipped inside a liquid, the liquid surface becomes curved near the contact. For some solid–liquid interfaces, the liquid is pulled up along the solid, while for others, the liquid surface is convex or depressed near the solid surface. This phenomenon can be explained using the concept of cohesive and adhesive forces. The adhesive force is the molecular force between molecules of different materials, that is, between the molecules of the solid and the liquid. The cohesive force...

High-plex Imaging using Spectral Confocal Microscopy to Minimize Non-specific Tissue Fluorescence

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2025

Spectral Iterative Bleaching Extends Multiplexity (IBEX) builds upon the base IBEX technique by adding heparin blocking to minimize nonspecific binding and leveraging spectral detection with computational unmixing to suppress autofluorescence. This approach accelerates image acquisition while reducing sources of background, enabling robust multi-round, high-parameter spatial proteomic analyses.

In vivo Quantification of G Protein Coupled Receptor Interactions using Spectrally Resolved Two-photon Microscopy

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Cited by 6 •

2011

By employing a spectrally resolved two-photon microscopy imaging system, pixel-level maps of Förster Resonance Energy Transfer (FRET) efficiencies are obtained for cells expressing membrane receptors hypothesized to form homo-oligomeric complexes. From the FRET efficiency maps, we are able to estimate stoichiometric information about the oligomer complex under study.

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