All animal experiments were conducted in accordance with the institutional guidelines and approved by the Animal Care and Use Committee of the First Affiliated Hospital of Anhui University of Chinese Medicine (Ethics Registration No. 202505A003).
Cell lines and cell culture
The identity of the human gastric cancer cell lines SGC7901 and BGC823 was verified by short tandem repeat (STR) profiling before experimental use (Supplementary File 1). SGC7901 and BGC823 parental human gastric cancer cell lines were maintained in RPMI-1640 medium containing 10% fetal bovine serum, 100 U/mL penicillin, and 100 μg/mL streptomycin. Cultures were incubated at 37 °C in a humidified atmosphere with 5% CO₂ and subcultured every 2–3 days after reaching 80–90% confluence. All experiments were conducted using cells at passages 5–20; cells were not used beyond passage 20 to ensure phenotypic consistency. Cell morphology and growth conditions were routinely monitored under an inverted microscope. Mycoplasma contamination was periodically assessed monthly using the Mycoplasma Detection Kit; all cell stocks were confirmed mycoplasma-negative prior to experimental use.
SGC7901/5-FU cells were maintained in medium containing 30, 45, 60 μmol/L 5-FU, and BGC823/5-FU cells were maintained in 10, 20, 30 μmol/L 5-FU. This process was continued for approximately 6 months. Prior to all functional assays, resistant cells were cultured in drug-free medium for 10 days to eliminate the acute pharmacological effects of 5-FU and reflect the intrinsic resistant phenotype. The half-maximal inhibitory concentration IC50 values and resistance indices (RI = IC50 resistant / IC50 parental) determined by CCK-8 assay were SGC7901 parental IC50 =5.32 μmol/L, SGC7901/5-FU IC50 = 38.76 μmol/L, RI = 7.29; BGC823 parental IC50 = 14.99 μmol/L, BGC823/5-FU IC50 = 72.86 μmol/L, RI = 4.86. All cell seeding densities were as follows: 5 × 103 cells/well for 96-well CCK-8 proliferation assays; 1 × 105 cells/well for 6-well apoptosis assays; 500 cells/well for colony formation assays; 5 × 104 cells/chamber slide for immunofluorescence experiments.
Cell proliferation, colony formation, and apoptosis assays
Cell viability was assessed using the Cell Counting Kit-8 (CCK-8). For the assay, cells were plated into 96-well plates at 5 × 103 cells per well in 100 µL of complete culture medium and incubated overnight to allow attachment. Dose–response curves and IC₅₀ values were generated by exposing the cells to increasing concentrations of DI (0, 5, 10, 15, 20, 30, and 50 nM) or 5-FU (0.01, 0.1, 1, 10, 100, and 1000 nM) for 24, 48, or 72 h. After treatment, 10 µL of CCK-8 reagent was dispensed into each well, followed by incubation for 2 h at 37 °C in a humidified atmosphere containing 5% CO₂, protected from light. Absorbance was then recorded at 450 nm with a reference wavelength of 630 nm using a microplate reader. IC₅₀ values were calculated by fitting a four-parameter nonlinear dose–response model in the analysis software. Cell viability assays were performed in three independent biological replicates, each consisting of five technical replicates.
For all subsequent functional experiments, four treatment groups were established: Control (vehicle), DI (10 nM), 5-FU (30 nM), and DI (10 nM) plus 5-FU (30 nM). DI and 5-FU were added simultaneously for 48 h unless otherwise specified. The selected concentrations were based on preliminary dose–response experiments that yielded measurable biological responses without excessive cytotoxicity.
For the soft agar colony formation assay, 500 cells were suspended in complete medium containing 0.35% (w/v) low-melting-point agarose and seeded over a 0.7% agarose base layer in 6-well plates. Following treatment with vehicle, DI (10 nM), 5-FU (30 nM), or DI (10 nM) plus 5-FU (30 nM), cells were cultured for 10–14 days at 37 °C in 5% CO₂. Fresh complete medium containing the corresponding treatments was replenished every 3 days. Colonies were fixed with 4% paraformaldehyde for 10 min at room temperature, stained with 0.1% crystal violet in 20% methanol for 20 min, photographed, and quantified using ImageJ. Only colonies containing at least 50 cells were included in the analysis. Colony formation assays were performed in three independent biological replicates, each with three technical replicates.
Cell apoptosis was evaluated using an Annexin V-FITC/propidium iodide (PI) apoptosis detection kit according to the manufacturer's instructions. Cells were treated simultaneously with vehicle, DI (10 nM), 5-FU (30 nM), or DI (10 nM) plus 5-FU (30 nM) for 48 h. Following treatment, cells were collected by trypsinization, washed twice with ice-cold PBS, and resuspended in 100 µL of binding buffer. Annexin V-FITC (5 µL) and PI (5 µL) were added, and the cell suspension was incubated for 15 min at room temperature in the dark. Subsequently, 400 µL of binding buffer was added before flow cytometry analysis, and at least 10,000 events were acquired for each sample. Gating was established using forward-scatter/side-scatter plots, and quadrant boundaries were determined using unstained and single-stained controls. Data were analyzed using the linked software. Apoptosis assays were performed in three independent biological replicates.
Immunofluorescence staining and confocal imaging
Cells were seeded onto sterile glass coverslips (1 × 104 cells/coverslip) in 6-well plates and cultured overnight. Four treatment groups were established: Control (vehicle), DI (10 nM), 5-FU (30 nM), and DI (10 nM) plus 5-FU (30 nM). Cells were treated simultaneously for 48 h before immunofluorescence staining. The selected concentrations were based on preliminary dose–response experiments that produced measurable biological responses while minimizing excessive cytotoxicity.
Following treatment, cells were fixed for 15 min at room temperature with 4% paraformaldehyde in PBS, permeabilized with 0.2% Triton X-100 in PBS for 10 min, and blocked for 1 h in 5% bovine serum albumin (BSA) prepared in PBS. Primary antibodies diluted 1:100 in 5% BSA/PBS were applied overnight at 4 °C. After washing three times with PBS (5 min per wash), cells were incubated for 1 h at room temperature in the dark with Alexa Fluor 647-conjugated goat anti-rabbit IgG (1:200) and FITC-conjugated goat anti-mouse IgG (1:200). Nuclei were counterstained with DAPI (1 µg/mL) for 10 min before coverslips were mounted in mounting medium, sealed, and prepared for imaging.
Confocal fluorescence images were captured using a confocal laser scanning microscope fitted with a 63×/1.40 NA oil-immersion objective. Imaging parameters, including laser power, detector gain, pinhole size, scanning speed, and emission windows, were maintained constant for all treatment groups within each experiment. For colocalization analyses, z-stack images were acquired at 0.3 µm intervals.
Fluorescence intensity was quantified using ImageJ. Background fluorescence was subtracted using a rolling-ball radius of 50 pixels, and thresholds were determined using Otsu's automatic method. Mean fluorescence intensity was measured within regions of interest defined by DAPI-positive cell boundaries. Immunofluorescence experiments were performed in three independent biological replicates. For each treatment group, at least 5 randomly selected microscopic fields were imaged under identical acquisition settings, and at least 100 cells were analyzed.
Establishment of the subcutaneous xenograft model
Male NOD/SCID nude mice aged 6–8 weeks were housed under specific-pathogen-free (SPF) conditions (temperature 22 ± 2 °C; humidity 50 ± 10%; 12 h light/dark cycle, food and water ad libitum). All animal experiments were conducted in accordance with the guidelines of the Animal Care and Use Committee of the First Affiliated Hospital of Anhui University of Chinese Medicine, and were approved under Ethics Registration No. 202505A003.
SGC7901 cells (1 × 106 cells suspended in 100 µL of PBS) were subcutaneously injected into the right flanks of nude mice. Tumor growth was monitored every two days using digital calipers. Tumor volume was calculated using the following formula: V = (length × width2)/2. Mice were sacrificed when tumors reached approximately 15 mm in diameter or met pre-defined humane endpoint criteria. Tumors were excised, photographed, weighed, and collected for further molecular analyses.
Experimental groups comprised n = 6 male NOD/SCID nude mice each (three groups in total: Control group, DI monotherapy, and DI + 5-FU combination). Following tumor establishment, mice were allocated to groups by block randomization stratified by tumor volume. Tumor volume measurements and body weight assessments were performed by an investigator blinded to group allocation; data analysis was conducted by a separate blinded investigator. Treatment was initiated when the mean tumor volume reached approximately 100 mm3, typically 7 days post-inoculation. A power analysis performed (based on preliminary data: mean tumor volume 800 ± 150 mm3 [control] versus 400 mm3 [DI + 5-FU combination]; effect size f = 0.88; α = 0.05; 1 − β = 0.80) indicated a minimum of four mice per group; six mice per group were used to achieve 1 − β = 0.90 and account for potential attrition.
Intravenous administration of the Danshen injection in vivo
Following tumor establishment and randomization, mice were assigned to one of three experimental groups: (i) Control group: sterile PBS (pH 7.4, endotoxin-tested), 100 µL, administered intravenously via tail vein every other day; (ii) DI monotherapy: DI 5 mg/kg in 100 µL PBS, i.v., every other day; (iii) DI + 5-FU combination: 5-FU 20 mg/kg in 100 µL PBS, intraperitoneally (i.p.), every other day; Danshen injection (DI, 5 mg/kg) was administered intravenously through the tail vein every other day throughout the treatment period. Control animals received equal volumes of vehicle solution. Body weight, tumor size, and general health status were monitored regularly throughout the experiment. The total treatment duration was 21 consecutive days from initiation. At the end of the study, tumors and major organs were harvested for subsequent analyses.
Tissue collection and endpoint procedures
Predefined humane endpoints included: body weight loss ≥ 20% from baseline; tumor diameter ≥ 15 mm; persistent signs of distress (hunching, labored breathing, inability to access food or water). At the study endpoint or upon reaching a humane endpoint, mice were euthanized by CO2 inhalation (fill rate 30–70% chamber volume/min) followed by cervical dislocation, in accordance with IACUC guidelines. Immediately following euthanasia, tumors were excised, weighed, and photographed.
Statistical analyses
Data are presented as mean ± standard deviation (SD) unless otherwise specified. 'Biological replicate' is defined as an independent experiment performed on separately cultured cell stocks (or separate animals); 'technical replicate' refers to repeated measurements within the same experiment. All in vitro data represent a minimum of three independent biological replicates; each performed with at least three technical replicates. Comparisons between two groups were conducted using a two-tailed Student's t-test, whereas comparisons among multiple groups were analyzed using one-way analysis of variance (ANOVA) followed by Tukey's Honestly Significant Difference (HSD) post-hoc test for all pairwise comparisons, or Dunnett's test where multiple treatment groups were compared against a single control. Prior to ANOVA, normality was assessed using the Shapiro–Wilk test, and homogeneity of variance was assessed using Levene's test; where assumptions were violated, the Kruskal–Wallis test with Dunn's multiple comparisons correction was applied as a nonparametric alternative. Statistical significance was defined as a two-sided P value < 0.05.