Depurination Depyrimidination

Depurination and depyrimidination are forms of DNA damage in which hydrolysis of the N-glycosidic bond removes a purine or pyrimidine base, respectively, leaving an abasic site in the DNA strand. These lesions arise when chemical conditions, including acidic environments and elevated temperature, destabilize the bond between a nitrogenous base and deoxyribose; the resulting sugar-phosphate backbone lacks normal base-pairing information. If unrepaired, abasic sites can block replication or promote incorrect nucleotide insertion, contributing to mutations and genomic instability. Studying these processes helps explain DNA damage and repair, supports genotoxicity research, and informs methods for analyzing genome integrity.

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JoVE Core - Molecular Biology
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Overview of DNA Repair

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2020

In order to be passed through generations, genomic DNA must be undamaged and error-free. However, every day, DNA in a cell undergoes several thousand to a million damaging events by natural causes and external factors. Ionizing radiation such as UV rays, free radicals produced during cellular respiration, and hydrolytic damage from metabolic reactions can alter the structure of DNA. Damages caused include single-base alteration, base dimerization, chain breaks, and cross-linkage. Chemically...

Research

JoVE Journal - Biology
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Detection of Modified Forms of Cytosine Using Sensitive Immunohistochemistry

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Cited by 8 •

2016

Herein we describe a sensitive immunochemical method for mapping the spatial distribution of 5mC oxidation derivatives based on the use of peroxidase-conjugated secondary antibodies and tyramide signal amplification.

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