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Demonstration of the Sequence Alignment to Predict Across Species Susceptibility Tool for Rapid Assessment of Protein Conservation
JoVE Journal
Genetik
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JoVE Journal Genetik
Demonstration of the Sequence Alignment to Predict Across Species Susceptibility Tool for Rapid Assessment of Protein Conservation
DOI:

16:02 min

February 10, 2023

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Kapitel

  • 00:04Introduction
  • 00:56Developing and Running a SeqAPASS Query: Level 1
  • 02:43Developing and Running a SeqAPASS Query: Level 2
  • 03:47Accessing and Understanding the Data: SeqAPASS Level 1 and Level 2
  • 05:54Manipulating Data Settings and Visualizing the Data: SeqAPASS Level 1 and Level 2
  • 07:23Developing and Running a SeqAPASS Analysis: Level 3
  • 08:28Identify Critical Amino Acid Residues through a Literature Search
  • 10:54Visualizing Level 3 SeqAPASS Data and Interpretation of Results
  • 13:45Results: SeqAPASS Level 1, 2, and 3 Analyses of the Conservation of Amino Acid Residues and Level 1 and 2 Analyses of μ Opioid Receptor Conservation Across Taxonomic Groups
  • 15:10Conclusion

Summary

Automatische Übersetzung

Here, we present a protocol to utilize the latest version of the US Environmental Protection Agency Sequence Alignment to Predict Across Species Susceptibility (SeqAPASS) tool. This protocol demonstrates the application of the online tool to rapidly analyze protein conservation and provide customizable and easily interpretable predictions of chemical susceptibility across species.

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