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Journal / Genetics / Characterization of a Pathogenic Escherichia coli …
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Characterization of a Pathogenic Escherichia coli Strain Derived from Oreochromis spp. Farms Using Whole-Genome Sequencing
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Characterization of a Pathogenic Escherichia coli Strain Derived from Oreochromis spp. Farms Using Whole-Genome Sequencing

Article DOI: 10.3791/64404-v • 09:44 min • December 23rd, 2022
December 23rd, 2022 •
1, 2, 2, 1
1Unidad de Investigaciones en Salud Pública “Dra. Kaethe Willms”, Facultad de Ciencias Químico Biológicas, Universidad Autónoma de Sinaloa, 2Centro de Investigación en Alimentación y Desarrollo, A. C. (CIAD), Unidad Mazatlán en Acuicultura y Manejo Ambiental

Kapitel

Summary
Automatic Translation

The feasibility of whole-genome sequencing (WGS) strategies using benchtop instruments has simplified the genome interrogation of every microbe of public health relevance in a lab setting. A methodological adaptation of the workflow for bacterial WGS is described and a bioinformatics pipeline for analysis is also presented.

Tags

Whole-genome Sequencing WGS Antimicrobial Resistance Molecular Mechanisms Pathogenic Variants Next-generation Sequencing Characterization Of Microorganisms Diagnosis Treatment Surveillance Source Tracking Clinical Context Environmental Settings Food Safety Genomics Technician
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