Ondrej Daum Sikl's Institute of Pathology, Faculty of Medicine and Teaching Hospital in Pilsen Charles University Biography Publications Institution JoVE Articles Ondrej Daum has not added a biography. If you are Ondrej Daum and would like to personalize this page please email our Author Liaison for assistance. Publications Prognostic Role of Macrophages and Mast Cells in the Microenvironment of Hepatocellular Carcinoma After Resection BMC Cancer. Jan, 2024 | Pubmed ID: 38287290 Protein Expression and Localization of ABC Transporters in Pancreatic Adenocarcinoma: Prognostic Role of ABCC8 Pancreatology : Official Journal of the International Association of Pancreatology (IAP) ... [et Al.]. Dec, 2023 | Pubmed ID: 37839922 Lynch Syndrome-associated Upper Tract Urothelial Carcinoma Frequently Occurs in Patients Older Than 60 years: an Opportunity to Revisit Urology Clinical Guidelines Virchows Archiv : an International Journal of Pathology. Oct, 2023 | Pubmed ID: 37612527 Exome Sequencing of Paired Colorectal Carcinomas and Synchronous Liver Metastases for Prognosis and Therapy Prediction JCO Precision Oncology. May, 2023 | Pubmed ID: 37141551 A Tribute to Prof. Ondrej Hes, MD, PhD (1968-2022) Modern Pathology : an Official Journal of the United States and Canadian Academy of Pathology, Inc. Dec, 2022 | Pubmed ID: 36333474 CTNNB1 Mutations, TERT Polymorphism and CD8+ Cell Densities in Resected Hepatocellular Carcinoma Are Associated with Longer Time to Recurrence BMC Cancer. Aug, 2022 | Pubmed ID: 35962322 T- and B-Cells in the Inner Invasive Margin of Hepatocellular Carcinoma After Resection Associate with Favorable Prognosis Cancers. Jan, 2022 | Pubmed ID: 35158872 Inoperable CASTLE of the Thyroid Gland Treated with Radical Radiotherapy with Complete Remission Strahlentherapie Und Onkologie : Organ Der Deutschen Rontgengesellschaft ... [et Al]. Sep, 2021 | Pubmed ID: 34160632 SDHC Methylation Pattern in Patients With Carney Triad Applied Immunohistochemistry & Molecular Morphology : AIMM. Sep, 2021 | Pubmed ID: 33624983 Undifferentiated Large Cell/rhabdoid Carcinoma Presenting in the Intestines of Patients with Concurrent or Recent Non-small Cell Lung Cancer (NSCLC): Clinicopathologic and Molecular Analysis of 14 Cases Indicates an Unusual Pattern of Dedifferentiated Metastases Virchows Archiv : an International Journal of Pathology. Jul, 2021 | Pubmed ID: 33506327 Colorectal Adenocarcinomas Harboring ALK Fusion Genes: A Clinicopathologic and Molecular Genetic Study of 12 Cases and Review of the Literature The American Journal of Surgical Pathology. Sep, 2020 | Pubmed ID: 32804454 Targeted Next Generation Sequencing of MLH1-deficient, MLH1 Promoter Hypermethylated, and BRAF/RAS-wild-type Colorectal Adenocarcinomas is Effective in Detecting Tumors with Actionable Oncogenic Gene Fusions Genes, Chromosomes & Cancer. Oct, 2020 | Pubmed ID: 32427409 Morphological Features Useful in the Differential Diagnosis Between Undifferentiated Carcinoma and Gastrointestinal Stromal Tumor Annals of Diagnostic Pathology. Jun, 2020 | Pubmed ID: 32388398 Colonic Adenocarcinomas Harboring NTRK Fusion Genes: A Clinicopathologic and Molecular Genetic Study of 16 Cases and Review of the Literature The American Journal of Surgical Pathology. Feb, 2020 | Pubmed ID: 31567189 Protein Expression of ABCC2 and SLC22A3 Associates with Prognosis of Pancreatic Adenocarcinoma Scientific Reports. Dec, 2019 | Pubmed ID: 31874997 Submucosal Mucoid As a Late Complication After Appendectomy-A Case Report International Journal of Surgery Case Reports. 2019 | Pubmed ID: 31003092 Papillary Renal Cell Carcinoma with Cytologic and Molecular Genetic Features Overlapping with Renal Oncocytoma: Analysis of 10 Cases Annals of Diagnostic Pathology. Aug, 2018 | Pubmed ID: 30072012 The Impact of Immune Interaction on the Metastatic Infiltration of Colorectal Carcinoma to Lymph Nodes Anticancer Research. Jul, 2018 | Pubmed ID: 29970545 Low-grade Spindle Cell Proliferation in Clear Cell Renal Cell Carcinoma is Unlikely to Be an Initial Step in Sarcomatoid Differentiation Histopathology. Apr, 2018 | Pubmed ID: 29194709 High-grade Renal Cell Carcinoma with Emperipolesis: Clinicopathological, Immunohistochemical and Molecular-genetic Analysis of 14 Cases Histology and Histopathology. Mar, 2018 | Pubmed ID: 28861890 Programmed Death-1 (PD-1) Receptor/PD-1 Ligand (PD-L1) Expression in Fumarate Hydratase-deficient Renal Cell Carcinoma Annals of Diagnostic Pathology. Aug, 2017 | Pubmed ID: 28807336 Spectrum of Lesions Derived from Branchial Arches Occurring in the Thyroid: from Solid Cell Nests to Tumors Virchows Archiv : an International Journal of Pathology. Sep, 2017 | Pubmed ID: 28730538 Hepatic Epithelioid Hemangioendothelioma - a Rare Tumor and Diagnostic Dilemma In Vivo (Athens, Greece). 2017 | Pubmed ID: 28652454 Warthin-like Papillary Renal Cell Carcinoma: Clinicopathologic, Morphologic, Immunohistochemical and Molecular Genetic Analysis of 11 Cases Annals of Diagnostic Pathology. Apr, 2017 | Pubmed ID: 28325361 Cystic and Necrotic Papillary Renal Cell Carcinoma: Prognosis, Morphology, Immunohistochemical, and Molecular-genetic Profile of 10 Cases Annals of Diagnostic Pathology. Feb, 2017 | Pubmed ID: 28038707 Anal Verrucous Carcinoma is Not Related to Infection with Human Papillomaviruses and Should Be Distinguished from Giant Condyloma (Buschke-Löwenstein Tumour) Histopathology. May, 2017 | Pubmed ID: 28012208 Nonsyndromic Intestinal Lipomas Are Probably Not Associated With Mutations of PDGFRA Applied Immunohistochemistry & Molecular Morphology : AIMM. Oct, 2017 | Pubmed ID: 26990750 Mixed Epithelial and Stromal Tumor of the Kidney: Mutation Analysis of the DICER 1 Gene in 29 Cases Applied Immunohistochemistry & Molecular Morphology : AIMM. Feb, 2017 | Pubmed ID: 26509905 Morphological, Immunohistochemical, and Chromosomal Analysis of Multicystic Chromophobe Renal Cell Carcinoma, an Architecturally Unusual Challenging Variant Virchows Archiv : an International Journal of Pathology. Dec, 2016 | Pubmed ID: 27631338 Selected Case From the Arkadi M. Rywlin International Pathology Slide Seminar: Benign Warthin Tumor of the Thyroid Advances in Anatomic Pathology. Sep, 2016 | Pubmed ID: 27438374 Genome-wide MicroRNA Expression Profiling in Primary Tumors and Matched Liver Metastasis of Patients with Colorectal Cancer Cancer Genomics & Proteomics. 2016 | Pubmed ID: 27365381 Histiocytosis With Raisinoid Nuclei: A Unifying Concept for Lesions Reported Under Different Names As Nodular Mesothelial/Histiocytic Hyperplasia, Mesothelial/Monocytic Incidental Cardiac Excrescences, Intralymphatic Histiocytosis, and Others: A Report of 50 Cases The American Journal of Surgical Pathology. Nov, 2016 | Pubmed ID: 27340746 Intrahepatic Biliary Cystadenoma-diagnosis and Treatment Options The Turkish Journal of Gastroenterology : the Official Journal of Turkish Society of Gastroenterology. May, 2016 | Pubmed ID: 27210781 Solid Papillary Renal Cell Carcinoma: Clinicopathologic, Morphologic, and Immunohistochemical Analysis of 10 Cases and Review of the Literature Annals of Diagnostic Pathology. Aug, 2016 | Pubmed ID: 27209513 Tissue MicroRNAs As Predictive Markers for Gastric Cancer Patients Undergoing Palliative Chemotherapy International Journal of Oncology. Jun, 2016 | Pubmed ID: 27081844 "Mucin"-secreting Papillary Renal Cell Carcinoma: Clinicopathological, Immunohistochemical, and Molecular Genetic Analysis of Seven Cases Virchows Archiv : an International Journal of Pathology. Jul, 2016 | Pubmed ID: 27072821 Biphasic Squamoid Alveolar Renal Cell Carcinoma: A Distinctive Subtype of Papillary Renal Cell Carcinoma? The American Journal of Surgical Pathology. May, 2016 | Pubmed ID: 26999503 SWI/SNF Complex-deficient Undifferentiated/Rhabdoid Carcinomas of the Gastrointestinal Tract: A Series of 13 Cases Highlighting Mutually Exclusive Loss of SMARCA4 and SMARCA2 and Frequent Co-inactivation of SMARCB1 and SMARCA2 The American Journal of Surgical Pathology. Apr, 2016 | Pubmed ID: 26551623 Molecular Genetic Alterations in Renal Cell Carcinomas With Tubulocystic Pattern: Tubulocystic Renal Cell Carcinoma, Tubulocystic Renal Cell Carcinoma With Heterogenous Component and Familial Leiomyomatosis-associated Renal Cell Carcinoma. Clinicopathologic and Molecular Genetic Analysis of 15 Cases Applied Immunohistochemistry & Molecular Morphology : AIMM. Aug, 2016 | Pubmed ID: 26447894 SOX10 and Olig2 As Negative Markers for the Diagnosis of Ependymomas: An Immunohistochemical Study of 98 Glial Tumors Histology and Histopathology. Jan, 2016 | Pubmed ID: 26287936 Chromophobe Renal Cell Carcinoma with Neuroendocrine and Neuroendocrine-like Features. Morphologic, Immunohistochemical, Ultrastructural, and Array Comparative Genomic Hybridization Analysis of 18 Cases and Review of the Literature Annals of Diagnostic Pathology. Aug, 2015 | Pubmed ID: 26031603 Mucinous Spindle and Tubular Renal Cell Carcinoma: Analysis of Chromosomal Aberration Pattern of Low-grade, High-grade, and Overlapping Morphologic Variant with Papillary Renal Cell Carcinoma Annals of Diagnostic Pathology. Aug, 2015 | Pubmed ID: 26009022 The Role of 18F-FDG Accumulation and Arterial Enhancement As Biomarkers in the Assessment of Typing, Grading and Staging of Hepatocellular Carcinoma Using 18F-FDG-PET/CT with Integrated Dual-phase CT Angiography Anticancer Research. Apr, 2015 | Pubmed ID: 25862885 Arteriovenous Malformation of the Thyroid Gland As a Very Rare Cause of Mechanical Neck Syndrome: a Case Report Journal of Medical Case Reports. Feb, 2015 | Pubmed ID: 25645320 Utility of Immunohistochemical Investigation of SDHB and Molecular Genetic Analysis of SDH Genes in the Differential Diagnosis of Mesenchymal Tumors of GIT Histology and Histopathology. Feb, 2015 | Pubmed ID: 25205505 Thread-like Bridging Strands in the Adenomatoid Tumor of the Small Intestine International Journal of Surgical Pathology. Feb, 2015 | Pubmed ID: 25106619 Aggressive and Nonaggressive Translocation T(6;11) Renal Cell Carcinoma: Comparative Study of 6 Cases and Review of the Literature Annals of Diagnostic Pathology. Dec, 2014 | Pubmed ID: 25438924 Renal Cell Carcinoma with Leiomyomatous Stroma--further Immunohistochemical and Molecular Genetic Characteristics of Unusual Entity Annals of Diagnostic Pathology. Oct, 2014 | Pubmed ID: 25175809 Immunohistochemical Detection of Cancer Stem Cell Related Markers CD44 and CD133 in Metastatic Colorectal Cancer Patients BioMed Research International. 2014 | Pubmed ID: 24864242 Infiltration of Colorectal Carcinoma by S100+ Dendritic Cells and CD57+ Lymphocytes As Independent Prognostic Factors After Radical Surgical Treatment Anticancer Research. May, 2012 | Pubmed ID: 22593500 [Predictive Diagnosis of HER2 in Gastric Adenocarcinoma] Ceskoslovenska Patologie. Oct, 2011 | Pubmed ID: 22145214 [What is Your Diagnosis? Answer: Paraduodenal Pancreatitis] Ceskoslovenska Patologie. Apr, 2010 | Pubmed ID: 21280280 Comparison of Morphological, Immunohistochemical, and Molecular Genetic Features of Inflammatory Fibroid Polyps (Vanek's Tumors) Virchows Archiv : an International Journal of Pathology. May, 2010 | Pubmed ID: 20393746 Elastofibromatous Changes in Tissues from Spinal Biopsies. A Degenerative Process Afflicting a Small but Important Subset of Patients Operated for Spinal Canal Compression: Report of 18 Cases International Journal of Surgical Pathology. Dec, 2010 | Pubmed ID: 19578045 Progress in Molecular Diagnostics of Gastrointestinal Stromal Tumors Expert Opinion on Medical Diagnostics. Nov, 2007 | Pubmed ID: 23489352 Diagnostic Morphological Features of PDGFRA-mutated Gastrointestinal Stromal Tumors: Molecular Genetic and Histologic Analysis of 60 Cases of Gastric Gastrointestinal Stromal Tumors Annals of Diagnostic Pathology. Feb, 2007 | Pubmed ID: 17240304 Mast Cells in the Microenvironment of Hepatocellular Carcinoma Confer Favorable Prognosis: A Retrospective Study using QuPath Image Analysis Software Esraa Ali1, Lenka Červenková2,3, Richard Pálek2,4, Filip Ambrozkiewicz1, Sergii Pavlov1, Wenjing Ye1, Petr Hošek2, Ondrej Daum5,6, Václav Liška2,4, Kari Hemminki1,7, Andriy Trailin1 1Laboratory of Translational Cancer Genomics, Biomedical Center, Faculty of Medicine in Pilsen, Charles University, 2Laboratory of Cancer Treatment and Tissue Regeneration, Biomedical Center, Faculty of Medicine in Pilsen, Charles University, 3Department of Pathology, Third Faculty of Medicine, Charles University, 4Department of Surgery and Biomedical Center, Faculty of Medicine in Pilsen, Charles University, 5Sikl's Institute of Pathology, Faculty of Medicine and Teaching Hospital in Pilsen, Charles University, 6Bioptická Laboratoř s.r.o., 7Department of Cancer Epidemiology, German Cancer Research Center JoVE 66743 Investigación sobre el cáncer
Mast Cells in the Microenvironment of Hepatocellular Carcinoma Confer Favorable Prognosis: A Retrospective Study using QuPath Image Analysis Software Esraa Ali1, Lenka Červenková2,3, Richard Pálek2,4, Filip Ambrozkiewicz1, Sergii Pavlov1, Wenjing Ye1, Petr Hošek2, Ondrej Daum5,6, Václav Liška2,4, Kari Hemminki1,7, Andriy Trailin1 1Laboratory of Translational Cancer Genomics, Biomedical Center, Faculty of Medicine in Pilsen, Charles University, 2Laboratory of Cancer Treatment and Tissue Regeneration, Biomedical Center, Faculty of Medicine in Pilsen, Charles University, 3Department of Pathology, Third Faculty of Medicine, Charles University, 4Department of Surgery and Biomedical Center, Faculty of Medicine in Pilsen, Charles University, 5Sikl's Institute of Pathology, Faculty of Medicine and Teaching Hospital in Pilsen, Charles University, 6Bioptická Laboratoř s.r.o., 7Department of Cancer Epidemiology, German Cancer Research Center JoVE 66743 Investigación sobre el cáncer