Dot Blot Assay

The dot blot assay is a membrane-based analytical method used to detect specific proteins or nucleic acids in biological samples without separating them by size, making it a rapid alternative to electrophoretic blotting. In this technique, samples are applied as discrete dots to a membrane, where target molecules bind and are recognized by labeled antibodies or complementary nucleic acid probes; a detectable signal indicates their presence. Dot blots support screening, sample comparison, and validation in molecular biology, immunology, and diagnostic research. Because the method is simple and requires limited sample processing, it is useful for analyzing many specimens efficiently, although it provides less information about molecular size than methods such as Western or Southern blotting.

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JoVE EoE - Blot Techniques

Dot Blot Assay to Quantify Viral Genome

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2025

In this video, we describe the dot blot assay to quantify a viral genome. The signal intensity is directly related to the amount of viral DNA in the sample.

A 5-mC Dot Blot Assay Quantifying the DNA Methylation Level of Chondrocyte Dedifferentiation In Vitro

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Cited by 17 •

2017

We present a method to quantify DNA methylation based on the 5-methylcytosine (5-mC) dot blot. We determined the 5-mC levels during chondrocyte dedifferentiation. This simple technique could be used to quickly determine the chondrocyte phenotype in ACI treatment.

Dot Blot Assay for Detecting Global N6-Methyladenosine RNA Modification Levels

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2026

Here, we present a protocol to semi-quantitatively assess global m⁶A levels using dot blot. Total RNA is extracted, denatured, spotted on a nylon membrane, probed with anti-m⁶A antibody, and visualized by chemiluminescence. Signal intensity, quantified by ImageJ grayscale analysis, reflects relative methylation abundance, providing a reproducible workflow for research.

Detection of the Surface Metal Transporters in Neisseria gonorrhoeae Using Dot Blot

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2025

Source: Maurakis, S., and Cornelissen, C. N. Metal-Limited Growth of Neisseria gonorrhoeae for Characterization of Metal-Responsive Genes and Metal Acquisition from Host Ligands. J. Vis. Exp. (2020)This video demonstrates the procedure for detecting surface metal transporters in Neisseria gonorrhoeae grown under metal-limited conditions using a dot blot assay, involving ligand binding, antibody detection, and colorimetric visualization.

5-Methylcytosine Dot Blot to Determine the Extent of DNA Methylation

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2025

This video describes the technique of dot-blot to determine the level of DNA methylation in human chondrocytes in vitro via the blotting of DNA samples on a nylon membrane and the subsequent visualization using monoclonal antibodies. This helps to determine the chondrocytes' phenotype at various stages in culture.

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