Soil Microbial Biomass Carbon

Soil microbial biomass carbon is the amount of carbon contained in living microorganisms within soil, including bacteria, fungi, and other microbes, and serves as a sensitive indicator of biological activity and soil health. It is commonly estimated by chloroform fumigation–extraction, which lyses microbial cells and compares extractable carbon in fumigated and unfumigated soil samples. Because microbial communities rapidly respond to changes in moisture, organic matter, temperature, and management, microbial biomass carbon helps reveal shifts in decomposition, nutrient cycling, and carbon storage. In environmental research, it supports assessment of soil quality, ecosystem function, restoration outcomes, and the effects of cultivation, pollution, or climate change.

Soil Microbial Biomass Carbon - Related Videos

Research

JoVE Journal - Environment

Assessment of Labile Organic Carbon in Soil Using Sequential Fumigation Incubation Procedures

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Cited by 4 •

2016

Labile organic carbon (LOC) and the potential carbon turnover rate are sensitive indicators of changes in soil nutrient cycling processes. Details are provided for a method based on fumigating and incubating soil in a series of cycles and using the CO2 accumulated during the incubation periods to estimate these parameters.

Research

JoVE Journal - Environment
Free Sample

Extraction and Analysis of Microbial Phospholipid Fatty Acids in Soils

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Cited by 133 •

2016

Phospholipid fatty acids provide information about the structure of soil microbial communities. We present methods for extraction from soil samples with a single-phase chloroform mixture, fractionation of extracted lipids using solid phase extraction columns, and methanolysis to produce fatty acid methyl esters, which are analyzed by capillary gas chromatography.

Measurements of Soil Carbon by Neutron-Gamma Analysis in Static and Scanning Modes

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Cited by 8 •

2017

Here, we present the protocol for in situ measurement of soil carbon using the neutron-gamma technique for single point measurements (static mode) or field averages (scanning mode). We also describe system construction and elaborate data treatment procedures.

Measuring and Mapping Patterns of Soil Erosion and Deposition Related to Soil Carbonate Concentrations Under Agricultural Management

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Cited by 1 •

2017

Spatial patterns of soil erosion and deposition can be inferred from differences in ground elevation mapped at appropriate time increments. Such changes in elevation are related to changes in near-surface soil carbonates. Repeatable methods for field and laboratory measurements of these quantities and data analysis methods are described here.

GC-based Detection of Aldononitrile Acetate Derivatized Glucosamine and Muramic Acid for Microbial Residue Determination in Soil

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Cited by 40 •

2012

We describe a method protocol for the GC-based analysis of the aldonitrile acetate derivatives of glucosamine and muramic acid extracted from soil. For elucidation of the chemical mechanism, we also present a strategy to confirm the structure of the derivative and the ion fragments formed upon electron ionization.

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