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Modeling an Enzyme Active Site using Molecular Visualization Freeware

Article DOI: 10.3791/63170-v • 14:37 min • December 25th, 2021
December 25th, 2021 •
1, 1, 1, 2, 3, 4
1The University of Texas at Austin, 2Mount Mary University, 3College of St. Benedict/St. John’s University, 4Wabash College

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A key skill in biomolecular modeling is displaying and annotating active sites in proteins. This technique is demonstrated using four popular free programs for macromolecular visualization: iCn3D, Jmol, PyMOL, and UCSF ChimeraX.

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Enzyme Active Site Molecular Visualization Freeware Modeling Biological Macromolecules Glucokinase Molecular Modeling Programs Ligands Amino Acids Water Molecules PDBID 3FGU Substrates Beta-D-glucose Magnesium Ion Phospho Amino Phosphoric Acid Adenylate Ester ANP Adenosine Triphosphate Analog ATP UCSF ChimeraX Modeling Program
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