Regeneration Pipeline

A regeneration pipeline is the coordinated sequence of biological events that restores damaged or lost cells, tissues, or organs, making it a useful framework for studying repair and renewal. After injury, molecular signals activate resident stem or progenitor cells and surrounding tissues, guiding cell proliferation, migration, differentiation, and extracellular-matrix remodeling; these steps must be regulated to rebuild functional structure without excessive scarring. In biology, mapping this pipeline helps researchers compare regenerative capacity across organisms, identify signals that control tissue repair, and evaluate strategies for regenerative medicine, wound healing, and engineered tissue replacement.

Regeneration Pipeline - Related Videos

Education

JoVE Science Education - Advanced Biology

An Introduction to Aging and Regeneration

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2023

Tissues are maintained through a balance of cellular aging and regeneration. Aging refers to the gradual loss of cellular function, and regeneration is the repair of damaged tissue generally mediated by preexisting adult or somatic stem cells. Scientists are interested in understanding the biological mechanisms behind these two complex processes. By doing so, researchers may be able to use somatic stem cells to treat degenerative diseases and develop therapies that could delay the effects of...

Research

JoVE Journal - Biology
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A System for Culturing Iris Pigment Epithelial Cells to Study Lens Regeneration in Newt

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Cited by 7 •

2011

In newt, the lens regenerates always from the dorsal iris by transdifferentiation of the iris pigmented epithelial cells (IPEs). Here we describe a procedure to culture dorsal and ventral newt IPE cells and their implantation to the newt eye. The implanted cells are then studied by tissue sectioning and immunohistochemistry.

Research

JoVE Journal - Biology
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Efficient Regeneration-based Agrobacterium-Mediated Transformation of an Asexual Amphibious Brassicaceae Species, Rorippa aquatica

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2026

We present an efficient, optimized protocol for Agrobacterium-mediated transformation of an asexual amphibious Brassicaceae species, Rorippa aquatica, without resource-intensive sterile tissue culture procedures. Utilizing a visual transformation marker and shoot regeneration pipeline successfully generated near clonal transformants, thereby advancing the future studies of plant's adaptation to the underwater environment.

An Assay for Lateral Line Regeneration in Adult Zebrafish

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Cited by 11 •

2014

Because many zebrafish models of neurological and non-neurological diseases are studied in the adult fish rather than the embryo/larvae, we developed a quantitative lateral line regenerative assay that can be applied to adult zebrafish disease models. The assay involved resolution at the 1) neuromast and 2) individual hair cell levels.

A Computational Pipeline for Intergenic/Intragenic Enhancer RNA Quantification in Mouse Embryonic Stem Cells

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2025

This protocol provides a streamlined computational pipeline for quantifying nascent enhancer transcripts. By integrating chromatin accessibility, chromatin feature, and transcriptional data, it enables accurate detection and strand-specific analysis of enhancer activity in complex intragenic regions, while remaining accessible to researchers without extensive bioinformatics training.

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