High-throughput Imaging

High-throughput imaging is an automated approach for capturing and analyzing large numbers of images or biological samples efficiently, making it possible to measure cellular and tissue features at scale. In neuroscience, robotic sample handling, rapid microscopy, and computational image analysis can systematically quantify signals such as neuronal morphology, protein localization, synaptic markers, or activity-related fluorescence under controlled experimental conditions. By combining standardized imaging with data pipelines, researchers can compare many treatments, developmental stages, or disease models while reducing manual selection bias and improving reproducibility. The approach supports phenotypic screening, circuit and cell biology studies, and identification of candidate mechanisms or therapeutics.

High-throughput Imaging - Related Videos

Research

JoVE Journal - Biochemistry
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High-Throughput Screening to Obtain Crystal Hits for Protein Crystallography

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Cited by 14 •

2023

This protocol details high-throughput crystallization screening, ranging from the 1,536 microassay plate preparation to the end of a 6 week experimental time window. Details are included about the sample setup, the imaging obtained, and how users can perform analyses using an artificial intelligence-enabled graphical user interface to quickly and efficiently identify macromolecular crystallization conditions.

Research

JoVE Journal - Biology

High-Throughput, Multi-Image Cryohistology of Mineralized Tissues

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Cited by 105 •

2016

In this manuscript, we present a high-throughput, semi-automated cryohistology platform to produce aligned composite images of multiple response measures from several rounds of fluorescent imaging on frozen sections of mineralized tissues.

High-throughput Screening for Chemical Modulators of Post-transcriptionally Regulated Genes

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2015

Here we describe a cell-based reporter gene assay as a valuable tool to screen chemical libraries for compounds modulating post-transcriptional control mechanisms exerted through 3’ UTR.

High-throughput Imaging and Analysis Workflow for Evaluating Skin Cell Phenotypes and Proliferation States in Tissue Samples

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Cited by 1 •

2025

The combination of iterative-bleaching-extends-multiplexity (IBEX) and a commercial nucleotide labeling assay (Click-iT EdU) enables the detection and categorization of dividing cell types in highly dynamic processes in fixed frozen murine tissue sections. Furthermore, a novel open-source image processing pipeline provides high-throughput image acquisition and analysis.

A High-Throughput Image-Guided Stereotactic Neuronavigation and Focused Ultrasound System for Blood-Brain Barrier Opening in Rodents

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Cited by 7 •

2020

The blood-brain barrier (BBB) can be temporarily disrupted with microbubble-mediated focused ultrasound (FUS). Here, we describe a step-by-step protocol for high-throughput BBB opening in vivo using a modular FUS system accessible for non-ultrasound experts.

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